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54-2728-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 86660 [Map]; Strand: w
      • AT4G00210.1 - [+] show detail - LOB domain-containing protein 31
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2728-1 - 5-prime edge 
    GTTGAATACC TGATGTTGAA GGGCGAAGAT ATGACCAACG CATCCGTAGA 
    CGGGATCGCG AAGCCTAGCC AATGCCTCGT AAGTAAGCGT GACGACAGCG 
    TCCAGTCTCC GGCTGGCTGG AATCATCATG AGGAGCTTGG AGGCGTTGCT 
    CGCCCCGAAA ACCTTGTGCA CGGCCGTGAA ATGAGACGTC CCTTCCACCG 
    AATCAAAGTA GGGAGCGAAG ACACAGTCAG CAACGCATTT CCGTCGGAGA 
    AACTTACATG CGCCGCATGG ACCTCCACAA CCGGTGGTGC TTCCGCTCAT 
    CTTTTATGTC AAAGACGTAA CGTTTTGTTT GGGGGAAGTT GTGTCGTCGT 
    CGACCACAGT TATTATATAT CCAATCCAAA GAGATGTTTA AGAGAGAGAG 
    ATGGATGGGT TTGTTTATGA ATAAATGTTT TTAAGTTGAT GTGGAGCATA 
    GAGGATCGTG TCAGGCAAGA AAATCATGTC TTGCTTTTGG TGGTGGGTCA 
    TTTATAATCA TTACATTTTT CTATAACTTG ATCATCTTTT CTTTTGTATG 
    TCCATATTTT TGTTTTTTGT TTTCCTTGGT GTGTTTCACT TTTCTGTACA 
    TAGTTGAATC ACACACTCAA GAAACAAGCT ATTTTCAAAC AAGTGAAAGA 
    ATTATCTATT TATGGACTCC TAAAATCAAT GAAAGCATAT NACACAAGGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 211838 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: exon6 (CDS)
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-2728-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGAG 
    AATGCTACTG TTGATAGCCA TTGCAGCTTT ATGAATCTGA TTGGTACTTT 
    CTCTCTTGTT CTTGAGTTGT TTTCTGGCTT TATCTGACAA ACCTTCTGAT 
    GGTACTAGAG GAACTGGTAA CCACCATTTC TCTTCTTTCC TTTGTACTAT 
    AACNTTTCCT GAATGATCCA GTCGAAGAAC GAGCTGATTT CATCGATAAA 
    CTTCCTTCTT CTGCATACCA AAACTCTGTG TTCTGAAAAC TATCCAATGC 
    TTCCTGTAAC AAACAAGGAT CAAAAACAGA TGTAACCATG TATCATTCAT 
    AATCAGACCG AGAATAGTCA TATACATTTT TCGGATAATA TATGTTACCA 
    TAAGCATTGA ATCTAGCTTT CTCAATGCAG GCAAGTTGAT ATAGATATCT 
    GCTCTTGGTC TACTCTCCAT CACCTGAACA ACTCACCAAC AAAGTTTTCA 
    TTTTTCCATT TTTTGTCTTT CAGTTTTCAT ACAAAATATT TGACAAGTTA 
    CTTACCTCAA CAGTAGCTCC ATTGCTTAGA TTCTGACATC TAGGGATGAA 
    TT

AT4G00210.1

Model type
Protein coding
Short Description
LOB domain-containing protein 31
Computational Description
LOB domain-containing protein 31 (LBD31); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 19 (TAIR:AT2G45410.1); Has 416 Blast hits to 414 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 292 Blast hits to 291 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR