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54-2830-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2217799 [Map]; Strand: c
      • AT4G04450.1 - [+] show detail - WRKY family transcription factor
        Distance: -580; Region: promoter
    Flanking Genome Sequence: 54-2830-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAN TTTATTAACN AACATGTCAT TNGGTTCNGT 
    CCANAGNNNA CAAATATATC ATACGACCCA ACAATTTGTT TTATATTACA 
    GACGTGTTGT TGGATCAAGC AATTCGAAAA GAGTAAAACT AATCAACNTG 
    TTGCTTTACG AGAGGGAGTT GTGTGCTTTT TTTTTTNTTT TTTTTTTGGC 
    NACNAAANGG GNTNNNTTNN TAAAAAANNN NNTTTTTTNN TTNAANCCCC 
    TTTTTGGGGG NNGGNNNNTT TTTTAAAAAA NNAGGGNGNN TTTTTTTTTA 
    AAAAANTCCN TGGNNNTTTT NNNAAAAAAA NTTTNNAAAT NGGGAAAAAN 
    NGCCCCTTAA AAAACCNTTT NNNTTNCNNA NNAAANTTTT TTTTTNAAAA 
    AAAAANGNGG TTTNGGGGAA ANTANCNAAN CCCNTTTTNT TTTTAAGGGG 
    GAAANGTTCG GGNTTTTNGN NNGNANCCCN TNNNTTNNAA AAAANTAANN 
    NGGGGGNNGG TTAAAANCTC CCNNAANTAA AANTTTAAAA ANCNNTNNAT 
    TGGGGGGAAN NATGGGGNCC TTTCCCTTTT ACCTTACCNA AACCCCTACC 
    CCNCCCTTNA NAAAANCCCN GGAANTNANT TTNAAATTTT TTTTTTTTNN 
    ANAAAAGGGG GGGGNCTTTT AACCTNNTTA AGGGGAAAGG CCTTNNTTTN 
    GNANAAAAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2391305 [Map]; Strand: c
      • AT4G04710.1 - [+] show detail - calcium-dependent protein kinase 22
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-2830-1 - 3-prime edge 
    CTTATGATGA TAACACTCAC TGCTTCCATG AGTTGCTTAA CTTCAGTCTC 
    AGAGAGTTTA GAGCCATGTC TATTCAGCCC CATTTTGAGT TCTTCATAAG 
    TGATTGACCC GCTTTTGTCC ATATCCATAT TCTCAAACAT GGTTTTAAGA 
    CCTTTGATCT CCTCTTCCGA TAGACCCTCC GCGATAACCT TCAAACCAAA 
    CCGCACAAAT CAAAATCCAA AGTTCAGGAT CATAATCTTG AAGCTACTAT 
    TTTACCTTAA GAGCTAGCTT CTTAAGCTAC CANCNCGGGC CGAANACCNN 
    NCGGGCCCCT NTGGCTTTGT GNCTTTTAAC AAGGATNTAN TTNTTAGGCT 
    NTTAAGATCG GGTNGCGGAN TAAGTNGTTA TNCNCAGTCA TACACATGAN 
    ATCAANTCAT ATTCGACTNC AAAACACTAA CCAACCTTCT TCTTGCTTNT 
    NAAAGCTNNN GACNNGGGCC NTNCACCAGC CTGNCCCNNG ANAGCTNNGA 
    TNCTGACTAC TTNGNCNNTN TNTNGGATNN GNNNNNGGAN CNCNNNGNNC 
    GNGNTNTAAA GACNGGGATN GANGNTNCCN NNCCCNGNNN ANNNNNCGG

AT4G04450.1

Model type
Protein coding
Short Description
WRKY family transcription factor
Curator Summary
member of WRKY Transcription Factor; Group II-b
Computational Description
WRKY42; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 31 (TAIR:AT4G22070.1); Has 3599 Blast hits to 3152 proteins in 220 species: Archae - 0; Bacteria - 6; Metazoa - 41; Fungi - 2; Plants - 3474; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04710.1

Model type
Protein coding
Short Description
calcium-dependent protein kinase 22
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 22 (CPK22); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 21 (TAIR:AT4G04720.1); Has 128215 Blast hits to 115900 proteins in 4387 species: Archae - 146; Bacteria - 12831; Metazoa - 47241; Fungi - 17786; Plants - 26994; Viruses - 481; Other Eukaryotes - 22736 (source: NCBI BLink).
Link
InterPro Scan - TAIR