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54-2836-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 71622 [Map]; Strand: c
      • AT1G01150.1 - [+] show detail - Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
        Distance: 0; Region: exon2 (CDS)
      • AT1G01160.1 - [+] show detail - GRF1-interacting factor 2
        Distance: -717; Region: promoter
      • AT1G01160.2 - [+] show detail - GRF1-interacting factor 2
        Distance: -735; Region: promoter
    Flanking Genome Sequence: 54-2836-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC TGCTCCAAAC ATTTTCACTT ATGATAATGT 
    GCCTCTTAAG AAGCGCCACT ACCTTGGGAC AAGTGACACT TTCAGAAGCT

AT1G01150.1

Model type
Protein coding
Short Description
Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Computational Description
Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: TRF-like 10 (TAIR:AT5G03780.1); Has 94 Blast hits to 77 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01160.1

Model type
Protein coding
Short Description
GRF1-interacting factor 2
Curator Summary
Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA
Computational Description
GRF1-interacting factor 2 (GIF2); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 425 Blast hits to 425 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 291; Fungi - 20; Plants - 89; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01160.2

Model type
Protein coding
Short Description
GRF1-interacting factor 2
Curator Summary
Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA
Computational Description
GRF1-interacting factor 2 (GIF2); FUNCTIONS IN: protein binding, transcription coactivator activity; INVOLVED IN: cell proliferation, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 3 (TAIR:AT4G00850.1); Has 35 Blast hits to 35 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR