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54-2839-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26500634 [Map]; Strand: w
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2839-1 - 5-prime edge 
    CCTTCGGAGA TCTCTGTTCT TGTCCTTGGC AGAAGAATAA CGTCGCCGGA 
    CACCATGAGA AGCAGTTTCC GGCGAGCTGC ACGTTCGCTG ATCCAGGCTT 
    TAACGCCATC AAAGGACCCG GTACGACTCC GAATAAGAAA TTTCCGCCTA 
    GTAAAAGTCT CTGAAACCCG GCGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26500569 [Map]; Strand: w
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2839-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AACCGAAGGA ATGTAGAAAG TTTAGCCGCG TCGTCCCGTA ATCTTCTCTT 
    TCCTTGTTAG TATCCGGTCC GGTCGAGTTT TTCCGGCAAT TGCTTAACCC 
    GATAATTGCA TCGGTTAAAT TGTGATTAAT TTAATAAAAT TGCCGTTTGG 
    AGAGACAGCA ACTAGCCAAC TAGACGATCT TGTTATTAAC TAATGACAAA 
    TGGGTTTGTG TAACAAAAAT GGATAAGATA CACGGGATGT GCTATGGTCA 
    GCACGTGCGA CCATGAATAT GATTTGGGCC CATTTTGTAG GCTGGTGGCC 
    CAGTTGATGA TTAGGTCATA TGAACAGAAC AATCTCATAA CCAACAATAT 
    CGAGCTATGA GAATT

AT5G66330.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR