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54-2840-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26499573 [Map]; Strand: w
      • AT5G66320.2 - [+] show detail - GATA transcription factor 5
        Distance: -1896; Region: intergenic
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 829; Region: intergenic
    Flanking Genome Sequence: 54-2840-2 - 5-prime edge 
    ACAGAGAGTG TGAGAGAGAG GAGCTAAAAA GTCCCACGAG AATTGTTAGC 
    CACTTTTGAA TCTTCCATCT CCCATTTTTT TCTATGGAAT GGATCGTACC 
    ACCAATGATA TGAATTTGTT CATTAAAAAT AGAGAAAAAA CAAAATTGAC 
    AGCGATTTGT TAATGTAAAT AAGAAACACT TGTTTGGTTT TATGCATTAA 
    GACATAGAAA GCAAAGGAGA CAACATATCA AATTCGAAAC CTTGGAGCGG 
    GAAAATGAAA ATCATTCAAT TTTGTCACAT ACTGACCGTG GTAGACTATT 
    CAAACTATCT CACCTTCTTG CATTACGATT TTTTTTTTTC AAATTTAAAA 
    AAAAANCAAA TTTTNTTNGN CTTTTNGTNT NTNAANCNAG TTNGNGGAAT 
    CAAANCTNTN TAAAAANACN TCCCGAANGN GAAANCTAAA ANTNTCCNGT 
    TTNAAACNTT AAAGGNGGTN GCCATCTNCT CANAGGGTGG ACTTTGGANN 
    AACCCCAANT GANTGANTGA TTGGGGGCNC CATTTCCTTT ATNAAGGAAC 
    ACCCCTTTNG TTTNGCCATT TTCTATTGGA CAGCCTAATT GTTAGGTTGT 
    TTTCNTTTTG AANACGGGCC TACNANAANA CTTTNATTNG NTNATCGAAT 
    CATATGGGCT CTNTAAATNT GACCCAACAT GTAAAGCCCA N

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26499493 [Map]; Strand: w
      • AT5G66320.2 - [+] show detail - GATA transcription factor 5
        Distance: -1816; Region: intergenic
      • AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 909; Region: intergenic
    Flanking Genome Sequence: 54-2840-2 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCTACTCT CTGTCATAGC 
    TTCTCTTACT ATTCTTCTTC TTCTTCTTCT TAATTTGACA TTTCAAAATT 
    TAAAAGAAAA AAAAANGTCC ANCAANCNTA AANACCCCNT NTCAANAANC 
    NCAGCTTTGC CGACGGATNC NGTCNAGGCT AATTTNGTCA TTNAATATTN 
    ANCATNGTTN CAAAATATTN ATCTTCTNAN ATTATCCATT TCATTGACAN 
    AATTANAGNG ATTNATGAAT ATNCGNGTTT NAATTNAGGC AANAGNGNGA 
    TGATTTTCCN CCCTAAATAA TNGNGAAANC AAANCANCAA NGGATTANCC 
    GTCGGGGAAT T

AT5G66320.2

Model type
Protein coding
Short Description
GATA transcription factor 5
Curator Summary
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66330.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR