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54-2848-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11705146 [Map]; Strand: w
      • AT5G31770.1 - [+] show detail - transposable element gene
        Distance: 3384; Region: intergenic
      • AT5G31787.1 - [+] show detail - transposable element gene
        Distance: -7967; Region: intergenic
    2. Chromosome: 5; Position: 11723508 [Map]; Strand: w
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -1944; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -15769; Region: intergenic
    3. Chromosome: 4; Position: 3952368 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1766; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4814; Region: intergenic
    4. Chromosome: 4; Position: 3954503 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -3901; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 2679; Region: intergenic
    5. Chromosome: 2; Position: 3618351 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron2 (CDS)
    6. Chromosome: 2; Position: 3626522 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 62; Region: intergenic
      • AT2G09187.1 - [+] show detail - transposable element gene
        Distance: 13081; Region: intergenic
    7. Chromosome: 2; Position: 3627081 [Map]; Strand: w
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 621; Region: intergenic
      • AT2G09187.1 - [+] show detail - transposable element gene
        Distance: 12522; Region: intergenic
    Flanking Genome Sequence: 54-2848-2 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT AATACACACA CCATTTCAGT ATGTATGAAT 
    ATTTTCTTAT TACATCTTTT TGATTAGTAA AATAACAAAT GGTTATTAGG 
    TCATCACTAA GCTACCATGN CGGGCCGANA NCCNNTCTNN GCCCTATNGA 
    TTTGTGTCTT CTAACAAGGA AACACTACTT AGGCTTATAA GATCGGGTTC 
    CGGTTTAAGT TCTTATACTC AATCATACAC ATGACATCAA GTCATATTCG 
    ACTCCAAAAC ACTAACCAAC CTTCTTCTTG CTTCTCAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18468099 [Map]; Strand: c
      • AT4G39795.1 - [+] show detail - Protein of unknown function (DUF581)
        Distance: 650; Region: intergenic
      • AT4G39800.1 - [+] show detail - myo-inositol-1-phosphate synthase 1
        Distance: 1249; Region: intergenic
    Flanking Genome Sequence: 54-2848-2 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTAACCTGTC 
    GTATCAAAGT TGATACTTAT TACGATTTTT TATTTTTTTA AAATATTTCA 
    TTTATACATA TATTTAAAGG TTTAGTCTTG TAAAAGACGT ATACATGCTG 
    TAAAATAGTT TTCTACATGC TGTGAAAAGG TTAAAAGTTT ATAGATGTTA 
    CATTTCTTTC TTTTTTTCTT CGGATTAGAT ATGTTTTATC TATCTTTCTT 
    CCATCATAAT TTTGTTTTAG TGTATAAGAA TTTGTCCATG GTAACACTCA 
    TCTGAACTAA CAATTTCTAA ACGCTATCTA TTAGTACTTG GAAAGTATGA 
    ACTCTTGTTC TCTATCATTT GAAATCACAT CAGTTTTTTG CTTCAGTATA 
    AATGTGTTTT GACATTTTTC ACACGAATTT TTTTTTAATA AAAACTATAT 
    GCATGGACCG TTATGGTTTT ACAAATTAAG TATTTTTATA AATTTATTTT 
    TATTTACTAC ATTAAAAATT TATTTTGATT ATAAAATTTT AATACAATTT 
    TTAAGAACAC AAAAATGCTT CTATAACGAT ACTTAAATTA AAGTACATAT 
    GTCTCGTTGC TCAATAATTG AAGATTTGTA TATTAATGGT TTATGGAAAT 
    GGATAGTTAT CAGTAGCTTA TAGATAGGAT TAGGGTTATA ATTAGNCTAT 
    GGATTATTTA TATATAATTN GGTTTTTTCC TTACCTCGTT TCCTGACCTC 
    AAACTTCGAN GCTTAATTGN NG

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G09187.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.3e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT4G39795.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF581)
Computational Description
Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G22160.1); Has 498 Blast hits to 498 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 498; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39800.1

Model type
Protein coding
Short Description
myo-inositol-1-phosphate synthase 1
Curator Summary
** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.
Computational Description
myo-inositol-1-phosphate synthase 1 (MIPS1); CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: myo-inositol-1-phosphate synthase 2 (TAIR:AT2G22240.1); Has 1863 Blast hits to 1859 proteins in 511 species: Archae - 107; Bacteria - 438; Metazoa - 126; Fungi - 158; Plants - 764; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G31770.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.7e-53 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31787.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32312.1)
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR