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54-2858-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12220214 [Map]; Strand: c
      • AT4G23390.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -501; Region: promoter
      • AT4G23400.1 - [+] show detail - plasma membrane intrinsic protein 1;5
        Distance: -529; Region: promoter
    Flanking Genome Sequence: 54-2858-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGCC GCATATAATT TGTTAAAACA GAATATATTA 
    CAGCTCAAAT GATGTGGACA ATTCTAACAT AATGTTTCTA TCAATTATGT 
    GAATGATATT ATAGAGGAAA TTATTGGATG TCAAAAATAT TATAGATGAA 
    AGAAGACACN TTCACATGGA AAATGTTCGC CTTATCGATC TCTACTGTTT 
    ATAGATCAAT TCATGGTTTA TTTAAGTTCC TTTGTGTCAC TACTGTTTTT 
    TTTTATTTAT ATTGGGCTTT GATCTAAAAA CTTTTTTTGG GGTCAATTGA 
    TCCATAAACA AGCT

AT4G23390.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT2G20170.2); Has 717 Blast hits to 667 proteins in 27 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 694; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G23400.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 1;5
Computational Description
plasma membrane intrinsic protein 1;5 (PIP1;5); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10720 Blast hits to 10702 proteins in 2215 species: Archae - 88; Bacteria - 5150; Metazoa - 1472; Fungi - 448; Plants - 2512; Viruses - 2; Other Eukaryotes - 1048 (source: NCBI BLink).
Link
InterPro Scan - TAIR