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54-2909-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 347495 [Map]; Strand: c
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -42; Region: promoter
    Flanking Genome Sequence: 54-2909-1 - 5-prime edge 
    CGTGAGAGCG TCGTATGCGG TTATCGCCAT GACTGAAAAA GGACTACGGG 
    AAAAGAGAGA GAGAGAGAGG ATTGGTTTTA TCATTGGGAT CACGTGACAG 
    GATCTACTTG TGAATTGACG GTTTTGCCCT TGTGGCGGCG ATCGTGTTTT 
    TTGGTTTGTT GTTGTTAAAA GTAAGAGTGG AATTTCCGGT TTACTTGGTT 
    TTGGTTTGGG ATAACGTGAG ATTGGCCTGA TTTGATTGTG ACGGGACTCA 
    TCTTCTTCCG TGTGGTTTGT TTATTAACGA TTTTTGCCCT TTCGGCGGCG 
    ATTTTGGTTC ATTGGTTTTG TTATTTTATT GCAAGAGTGG GAGTTCCGGT 
    TAAAGAGGGT TTGGTTCGGT TTAATTTGGT TTGTGACCAC GTGACATTGG 
    CTGATTGTTG CGACATGTCT TTCGTGTGGG TTTGCGTGGA TTGACGATTT 
    TGCTCAATGT GATTTCTGAA TATGTGTTCG TGTTGGCCAT ATGGTGTATT 
    CATGAAAATA ACTTTATAGA AGGTTAAATA NTATTAGATT TAGGATATAT 
    GTCAATCTTC TGTNTCTCTA TATTTACTCC NATACNTTGT TATCTCCTAT 
    GAGGCANCTG CTGNTGTATA AATACCTCTC AAATTCTCAA ATTCTACTCC 
    NATNCTAAAA NCTTGAATAN NNATCNNTTT CNTNTNTGGG AGTNACAAAT 
    CAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 347611 [Map]; Strand: c
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-2909-1 - 3-prime edge 
    CTCTCACGGA GAGACAAAAA GCCCCCAAAG TCCTCCTTAT TAACGATTTT 
    GCCATCTCTT CTTCTTCATC ATCACCACCT TTCTTCAACC TCGCCGCAAC 
    TTTCCGCGAC AACATCAGAT CGTTCCTCCG TGAATATGCC GAGATTGAAG 
    ATTACACCAT CGACGGAGCC ACCGTCTCTA CTATTTTCCT TGGAAGCCAA 
    GCAAATGGCG TCGTTTTCCC TCTTTACATC ATCGAACAAC AAATCTCTGA 
    TTCTTCTCCA AACCCTCTCT GCGATTTCTG TCGATGCTTT GGTAAATAAT 
    AAATCTTAGG TTTTGTTTTT TCGTTGTTCT TGGTAAAGTT TCGATTTTGG 
    ATCGTTTACG TGTGTGTATA TATATAGGTT GGGGTCATCA CTATGTAACG 
    AAGAGGAAGT ATCATATGAT AATCCCAAAC CGTGATGAAT GGAATGAGCC 
    ATTGAAGAGA GAAAGCT

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR