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54-2929-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28868730 [Map]; Strand: w
      • AT1G76878.1 - [+] show detail - other RNA
        Distance: -761; Region: promoter
    Flanking Genome Sequence: 54-2929-2 - 5-prime edge 
    CCGATGATGA TTCGCTGTGT CACAATTTAA TTCATAAGTA CTATCGACAC 
    ATGTTTGGTC GCATTTCCTG ATCTGTCTGT TTAACCGAAA AATTGATGTA 
    TCTACCGATG ATCGTGACTC CTCTTTAACG TTTTTTACNG TATGCTTACT 
    TTACTTGTAA TATACATGTG CATAAACACT CGCTCGTGAA ATCTGCAAGG 
    ATTAACACAT CATACAAATT GTGATTATTA TAGCGNGTTT CAAATTAGCA 
    TTACTATTCA TACCGAACAC AAATTTTAGT TAAAGTTTGG TTTGTTTGGT 
    TCATGAACAT TCAAGATGTN ATGGATTTTG CACATGTTAA CAATGAAGAG 
    CATCGTATAT ATAAATATAT CTACAATAAT CCTCGCTGTT TTTATTCTGT 
    ATGTNTTGCA AGCTATATAC TACACTAATT AAATTAATTA TTATGAATTN 
    GTTACCTAAT CGACATTGAA AATTACCTCT ATGTAGAGAC CTATTTTGTG 
    TCAGATTGGT TAAGAGCTGT TTTCTTCTCA TTTTTGGGTG NGTGTGTGTG 
    TGTGTCNCAG NGTATGNGCG TATNCACATN NTNNATNNNT AACATNANNG 
    GNCTNNNACN NCNNNANACC TAGACNCGAN TCTTNAATNT CNTACCCANC 
    CTTNAGAANA AAGNGAANNA CCNTTNTTNN NGNAGGGNGA GNNGGNNTTA 
    TN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28866694 [Map]; Strand: w
      • AT1G76880.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G76878.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-2929-2 - 3-prime edge 
    TGAAAACGGT AGCAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GCATAACTGT CGTTACCGGA GGAGGAGTTG AAAATATGGA GCTGTTGTTG 
    TTGTTGTTGT TGTTGTTGTT TTGCTGTGGT CGAAGAGGCG TTTGTTGTTG 
    ATGATGGTGG AGTGAGGTTG TAGATTGAGA CTCGAACCAT CCCGGGCCAG 
    TCCGACCACN CNTGCCCTAT AATTCNNAAA CCCANNCACC CATTACAACT 
    NCTANNCGAA CCAANCCGGN CCTTCAACCN CGCTCGCCCN CTNNNCNA

AT1G76878.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G76880
Link
InterPro Scan - TAIR

AT1G76880.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 4096 Blast hits to 3293 proteins in 319 species: Archae - 0; Bacteria - 232; Metazoa - 1014; Fungi - 378; Plants - 799; Viruses - 55; Other Eukaryotes - 1618 (source: NCBI BLink).
Link
InterPro Scan - TAIR