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54-3074-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 130651 [Map]; Strand: w
      • AT2G01240.1 - [+] show detail - Reticulon family protein
        Distance: -1395; Region: intergenic
      • AT2G01250.1 - [+] show detail - Ribosomal protein L30/L7 family protein
        Distance: 2046; Region: intergenic
    Flanking Genome Sequence: 54-3074-1 - 5-prime edge 
    ATTGCAGAGT TGCCTGGGAA GCGTTTAAAG AGTGCGAATA TTTGTGAATT 
    GTGACAGAGA AGCCTTGTTA GGTATTTACG ACTGTCATTA TACTATCCAG 
    GATTCTACCT ATAATTAGGG CTATTGAAAA TAATGTAATA GTGCCAAATG 
    ATCAGATTGT GCTGGTTATT TCACAGGTCT CTGCAAATAT AACAGTTTAA 
    GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 4889364 [Map]; Strand: w
      • AT2G12160.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -432; Region: promoter
    Flanking Genome Sequence: 54-3074-1 - 3-prime edge 
    TCTGCAATGC TCTTTCGATG TCATCTGTGC AAATGCTCAT ACCATTGATC 
    CGGATTCCAT AATAAGAACA GAATGCAACA CAATACTGAT AGACTTTAGT 
    ATTATGAATC TCAATGTAAA TACTGGATTA AAGCCTATCT TTCATAAAGT 
    TCCATAGATT AATAAAGACT CTCAAGGTTT AGGAATTACA AGGAATGAAC 
    AATCAAAACA AATGAAGAAC GAGACTAGAT TCTCGGCATC TCTTCGAATA 
    TATTCTCTCC ATACGATAGT CTCATAGCGA CTAATCCTCC ACTTGATTCA 
    ACATGTCTTT CCCCCAAAGC CACCTCTCCT TATTTATACG CAACAATCCC 
    AAAGCACAAC CTTAACCCTT CATACGTGTG ATCCATGTCA CCTCATCAAC 
    CTCCTTACTT GTCATATCAT CACACGTGTG TGCTACTTTG TCCTTCTTTG 
    TCCTGAAATA CACCCTGTGT AACTTATCAA TACCCCCGCC TTCGAAATGC 
    AGCTTGTCCT CAAGCGTAAA TGCAGAACCT TGCTTCTCCA TCTGTGCCAT 
    GTAGAAAGGG ATTTGGTCTG AAGGGCACAC CAAGTAACTA AGTTTTGAAG 
    CCACATTATG TATCTAGTGA CCATGTTTCC TCCAAAGAAC AATATAGAGT 
    TGTTGGTGGT ATTTGTAGTC TTCGTGATAT ACTTTTGAAA GAGACTGAAC 
    ATTTCTAGGT TGGAGGCAAG AGT

AT2G01240.1

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 2 (TAIR:AT4G11220.1); Has 375 Blast hits to 375 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01250.1

Model type
Protein coding
Short Description
Ribosomal protein L30/L7 family protein
Computational Description
Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1297 Blast hits to 1295 proteins in 388 species: Archae - 210; Bacteria - 1; Metazoa - 453; Fungi - 213; Plants - 195; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G12160.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR