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54-3089-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10854870 [Map]; Strand: w
      • AT4G20060.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-3089-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGACG CAACCGCTTA GCCATTTTAT TTGATATGAA 
    CCAACCGGGA AACGCGAAAC GTCTAACAAG CAGCTTGAAA ACCCTTGTCC 
    TCTCTCGTTT GGTTCGAACT GCACAACCGT AGAAACACCA CTCTTGGTCC 
    AATCAAATCG ACCTGAAACG TCCGGCTTCT TACCAGACTT TATAGCATGA 
    TGAAACAGCT TGTTACTCAT TTCAATCAGA TCTTCATCTC TCCAAGGGGA 
    ATAAGACTTT TGGTTTCTGT TGTTTTCACC GTGTTGAGTT GGAGAATGAT 
    AAGCTAGTTT AGTATAGAGA AGGCAATACA GTTTGTTAAG TCGACCAGGG 
    ACTTGCCGTT GTTGTATGTT TTTCAACTGA AGACAAAGAT CTAGTGACAG 
    TTGAAACCCT TGTTCCACTG AAACTGTGTC AGGAATACGT TTGCTACTCT 
    CTGAACTAAG AGCAAATAGC TCGGCACCAA CACAAGGCCT TATGTTGAAG 
    AAATACTTTG GAATACCAAA AGGAATCTGC ATCCATTTCA TAATTGCTTG 
    TGACAGTAGA TGCCTGCAAC TTTTCGTAAT CTCAGACATA ATCTCCTCTT 
    TGTGCATTGA CATTGACTGA TTCTGCAATC CATAAGTGCA TGAAAGAGCA 
    TCTCTGCAAA TAGAGAGCAG CATCTTTACT TCGCCACAGA CTCTCAAAAC 
    CTGATTCCTA GATTGCAAGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10839601 [Map]; Strand: c
      • AT4G20000.1 - [+] show detail - VQ motif-containing protein
        Distance: 459; Region: intergenic
      • AT4G20006.1 - [+] show detail - unknown protein; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 pro...
        Distance: 1373; Region: intergenic
    Flanking Genome Sequence: 54-3089-1 - 3-prime edge 
    GTTGCAGATG GTCTTACCAT ACTACACAAC TCGTTTATGT GTTGTTTGTA 
    CTTAGTGTTA CTGATAATCC AACTCTGTTT TCTAAAAATT AATTCTAGTT 
    TGCAGTACGT TAAAACGATT TTGATTGATA TAACAGATTT GATAAGTATA 
    TAAATCGTTT AAATTTCGTA TATTCATAAA ATAATTTAAT TTCTATATTT 
    AACATAATAA ATTTAAAATT AAGTAAAACG ATTTTTGAAA ACAACTTGTA 
    TTTTTCACCA ATACAACCTT TGAATATCTC AATGCACTTT TTGAATCTTC 
    CAATAATCAA TGTAAAAGTA CAAAGNTTTT GAATCTTCCA ATAATCAATG 
    TATAAGTACA AAAGTTATGT TTTCGTATGT GCTTACGTTC CCATATATGT 
    AAAACAAAAT TCATTCATTT TGAAGACTTT TACAATATTC CTTAGGAATG 
    ACTCTTTTGA ACTATATCTA ATTAATATCG GTTGACAAAA AAAAAATNCN 
    TNTTTCANCA GTCAGTNCAA TTAAATGTNT CGGATAANCT ATCGNAATTT 
    CATAAAANGA AATTAACTGG TTTATGGGAA NGGNNCGTNC TATTCTACTA 
    TTTGGTNAGN ATTATTNAGG GTTAGTTTTA GNAATATATA TGCGTNCGTG 
    GGAACTCANT AAAAAAAAAA AAAAAAANAA ANNTTTTTTN NNNAANNNGG 
    GANNGGGNNT TTNAANTN

AT4G20000.1

Model type
Protein coding
Short Description
VQ motif-containing protein
Computational Description
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); Has 92 Blast hits to 92 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20006.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20060.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
EMBRYO DEFECTIVE 1895 (EMB1895); FUNCTIONS IN: binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 205 Blast hits to 155 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR