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54-3101-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4177399 [Map]; Strand: c
      • AT3G13050.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 54-3101-1 - 5-prime edge 
    CCACCGCAGT TATGATAAAC CCTTTCCTGA GGAATTCAAG GCACAAACAT 
    CAAAATCAAA TGAAGCCACA ATGCATCATA AACAGAAGAA TATGACCCAA 
    AACAAAGTCC ATTTTAGCAT TGATTGATGA CCATTGACAC AAGACACACA 
    GAAATCGGAT GAACAAAGGA TGGTCATAAG CTAAACAGTC TGAAATTCAG 
    CATTAGACAA GGTCAGAGAT CATTCAATTC AAGAGCTCAT AAGAATATGA 
    ACATTTACGG AACAATTCAG CCGTCCCCTT TCTACTTGAG GTACCAAGAA 
    ACTTATATCA ANGACAACAA GTATGATAAA AGCTACCTGC GGCCATGTTT 
    ATCAGAAACA ATGCCCCAAG AGTAAGCACC AATGAGCATG CCAGCAAAAA 
    CGACGCTNGT TATTAAGCTT TCCTGGCGTG CAGAGAGATT CCAGAGAGAN 
    TGAACAGCAG GTCCNACGAA AGAGAGAAGC ATCATCTCCA TGGNCTGTGC 
    AACCCAACCC ATTCCAGCGT NNGCGAGGAC GTNNATTTGG ANCTTGCCAA 
    ANGCCATCGN CACAAGAGCT NCNTCCACCG TGGANNCNAG TGTTCCTATC 
    TNCCANGNAA AAATGGGGGA AACNANCCNG CNAGNGAAGT GTCGGGNANT 
    AACCAANTNN GATNGGGGTN CTNCTTTGCT CCNAACNNGN TGCAGAAACC 
    AAATGCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4177515 [Map]; Strand: c
      • AT3G13050.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-3101-1 - 3-prime edge 
    TGCGGTGGTG ACTTTTGTAG CTGGTTTCTT GAGCGCATTT TCACCTAACT 
    ACATGTGGTT GATCATTCTT CGCTGTTTGG TTGGTCTTGG GTTGGGAGGA 
    GGTCCTGTTC TTGCTTCTTG GTATCTTGAA TTCATACCTG CACCAAGCCG 
    AGGGACTTGG ATGGTTGTTT TCTCAGCTTT CTGGACCGTT GGAACCATAT 
    TTGAGGCTTC CCTTGCTTGG GTATAACTCA TGCCTTTCTT TGTTTATTTT 
    CCAGTATAAT TTGGACGCTA GCTTTTCACA TCACCATGCA ATGCAATCTT 
    TTGCAGTTAG TCATGCCAAG ATTGGGTTGG AGGTGGTTAC TTGCATTCTC 
    TTCGGTACCT TCTTCGTTAC TTCTTCTGTT CTATAGGTGG ACATCTGAGT 
    CTCCTCGGTA CTTAATTCTA CAAGGCCGGA AAGCCGAAGC TCTTGCCATA 
    TTAGAGAAGA TTGCGAGGAT GAACAAAACC CAACTACCTC CGGGTGTTCT 
    CAGTTCAGAG TTGGAGACCG AGCTGGAAGA GAATAAAAAC ATTCCAACAG 
    AAAATACTCA TCTTCTCAAG GCTGGAGAAA GTGGAGAAGC GGTTGCTGNG 
    NCTAANATTG ACTAAAAGCT GATAANGAAC CAGGTTTTCT CATTACTAGC 
    TCTNNNATCT CCAACGGCTA ATGAAGCGGA CTATGCTACT ATGGGGTGGN 
    GTTNTTTNNA AAANCNNAN

AT3G13050.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter4 (TAIR:AT3G20660.1); Has 38439 Blast hits to 37687 proteins in 2363 species: Archae - 738; Bacteria - 22281; Metazoa - 5017; Fungi - 6515; Plants - 2234; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink).
Link
InterPro Scan - TAIR