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Mutant Lines
54-3193-1

54-3193-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 18468083 [Map]; Strand: c
  - AT4G39795.1 - [+] show detail - Protein of unknown function (DUF581)
    Distance: 634; Region: intergenic
  - AT4G39800.1 - [+] show detail - myo-inositol-1-phosphate synthase 1
    Distance: 1265; Region: intergenic
Flanking Genome Sequence: 54-3193-1 - 5-prime edge
```
CTNTATTTNC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCCC TAATACACAC ACCATTTCAG TATGTATGAA 
TATTTTCTTA TTACATCTTT TTGATTAGTA AAATAACAAA TGGTTATTAG 
GTCATCACTA AGCT
```

3 prime edge [+] show sequence

Chromosome: 2; Position: 320258 [Map]; Strand: c
- AT2G01720.1 - [+] show detail - Ribophorin I
  Distance: 0; Region: exon1 (5UTR)
- AT2G01730.1 - [+] show detail - cleavage and polyadenylation specificity factor 73 kDa subunit-II
  Distance: -220; Region: promoter

CGGTCAACTA CAAAGTCTCA GTGTCTCTCA CTTCTCTCTT GATTTAGGGA 
TTAGTTACGA GCTTTTTTCT TCCTCAGATT AAAAACGACA TGAGACGTTG 
TCGTTTCAAA CTTTTAAATT TAATGGGCCG TGAGAAGAAC TATTATTGGG 
CTTCACACCA CAAAAATATC GACGGTTGGA TCAGACACGT GTAATAACTC 
CGAACGGTTC CGATGTCACT GAACACTTTG CCGCCATTCA AATTCGTTTG 
TCGACCTAAC TCTGTTTCTT CTCTCGCCCC CTTCAAAATT TTCTCCGGTC 
ACTTGAATTT GTGTTCTGAT TCAACGAGTA AGATATTTTT GACCATCGAC 
GAGTTTTGAA ACTCAAATTG TTGTTTATTT CTTCAGTAAC TATGGCTATC 
GATTGTCTCG TACTTGGTAA CAGTTTTTGT TCTTCTTCTT CTTCTCTCTT 
TGCTTCTTCA AAGTTTCACA ATTTCAATTT CTGTATAATT CTATCTTTTT 
TGTGTTGTAT CCAGGTGCTG GACAAGAGAT TGGAAAGAGC TGTGTGGTAG 
TGACGATTAA TGGTAAAAAG ATAATGTTCG ATTGTGGGAT GCATATGGGC 
TGTGATGATC ACAATCGTTA CCCAAATTTT TCTCTCATAT CTAAATCCGG 
TGATTTTGAC AACGCGATCT CTTGTATCAT CATCACACAC TTGTATTGAT 
TCTTCAAACC CAGAATTTGT CC

AT2G01720.1

Model type: Protein coding
Short Description: Ribophorin I
Computational Description: Ribophorin I; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: Ribophorin I (TAIR:AT1G76400.1); Has 386 Blast hits to 386 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 127; Plants - 63; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01730.1

Model type: Protein coding
Short Description: cleavage and polyadenylation specificity factor 73 kDa subunit-II
Curator Summary: a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo
Computational Description: cleavage and polyadenylation specificity factor 73 kDa subunit-II (CPSF73-II); CONTAINS InterPro DOMAIN/s: RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-Casp domain (InterPro:IPR022712), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73-I (TAIR:AT1G61010.3); Has 5072 Blast hits to 5039 proteins in 1435 species: Archae - 491; Bacteria - 2753; Metazoa - 569; Fungi - 259; Plants - 193; Viruses - 0; Other Eukaryotes - 807 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39795.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF581)
Computational Description: Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G22160.1); Has 498 Blast hits to 498 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 498; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G39800.1

Model type: Protein coding
Short Description: myo-inositol-1-phosphate synthase 1
Curator Summary: ** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.
Computational Description: myo-inositol-1-phosphate synthase 1 (MIPS1); CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: myo-inositol-1-phosphate synthase 2 (TAIR:AT2G22240.1); Has 1863 Blast hits to 1859 proteins in 511 species: Archae - 107; Bacteria - 438; Metazoa - 126; Fungi - 158; Plants - 764; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
Link: InterPro Scan - TAIR