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54-3201-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26507189 [Map]; Strand: c
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -620; Region: promoter
    Flanking Genome Sequence: 54-3201-1 - 5-prime edge 
    ATTGATATAC ATCAGTGTAT GTATTGTATA CATAATTAAA TATTTTAATA 
    CTATCAGGTG TTCATTATTA AAGTTTGTAT ATATAATGAT AAAAATAACA 
    GAGTAGTAAT TTGCTTCCTT GGAAACATGG ATAAGCAACN TGTTTTCCAG 
    CTGCGAACTT TAGGCACTTA ATTTTAAAGT CACAGGTATA CACTACGCAA 
    CCAAAGCAAG ATTTCGCTAA TAATAATTAA AATTGCATCG AATCTAACTA 
    AAGAATCTAA AAATACAAGT ATACCCAGTC CCCAACGTTG TGTAGGACGA 
    TATATGATTA TAAAGTTTTA GTTTAGATAT TACATAACTA TAGATTTCTC 
    ATAAATAAAG AAATCTTCCG TTCATTTCAC TAAAATATCG TTCGAACAAA 
    TAATACACAG ATTAATATCT AAACGTAAAT CATATAAACA AATAGTGTAG 
    GATTTAATTA TAGTAGCATT TTGGCAAACA CAAACAGACA AACAAAGGAA 
    GAGGCAGCGT GTTTTCCGGT AGAGAAAAGA CGGAGAGAGT AAAAGCCGAA 
    GTTGTAAACG TGGCAACATA TTGACCGCAG GATCTAAAAC ACGTGATGAT 
    CAACGGTAAG ATATATCTTG TCCGAGAAGT GTTTTGTGAT ATTAATTGGG 
    TGTAAGGAAA ATCTGGGAAA ACAAACAAAA AAGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26507305 [Map]; Strand: c
      • AT5G66350.1 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -736; Region: promoter
    Flanking Genome Sequence: 54-3201-1 - 3-prime edge 
    ATATCAATTG TCCCGTATAC CTATACCCCA TGAATCTTAA TTTAATTGAC 
    CAATTAATCA TTCCAAATTT TAACGAATTT CAGTTGTTTC AGAATATCAA 
    ACTACAGACA AAGTAAAAAA CTGAAGATAG TTCATGGATT TTTCCAAAAG 
    GATATGGAGA GTTGACTAAT AAGAAGAGGG GCACTATAGT CATTTCCTAG 
    TGGAAATACC CACTGTTGTG TAAAAGAGAG AATACATTTA ATGAAAGTGA 
    GGTTGTAAAA AATACATGTA TTTATGAAAT GGATGAAAGT TATTGTTGAC 
    ATAAACAATC AGCAAAATCA TCTATCCAAC CTCTTCACCG TATTGTAAAC 
    AATGTTAATG TGTATCTATG AAATAGAGTA TAAAAGACAA CTTTAAATTT 
    GATCTAGAAG CTGTAAATTT CAGAAATCAA TTTGGATGTT TTAATGGTTT 
    TCTTGTTATG ACAATCTTAA TGTATGTGAG GGTTTGTACT TTGTTGAATG 
    CAAAAATTAT GAGTGACTGA AATAGAGGAG AAGAAAATTG GGGATAGAGT 
    TCGATGAATA TATGCAATCA TTTAGGACCG AGAAATTAAG AGAGGGGAGT 
    GGGCAAAAGG GACAGTGACA TTCTCTCGGA TTTTATTCTT GTATATAACT 
    AAATTACAAA TCCATAAATT CCAAATGTAT TGGTAACATC GATTATCTTT 
    GCNAN

AT5G66350.1

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.
Computational Description
SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR