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54-3210-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26823297 [Map]; Strand: c
      • AT5G67230.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-3210-1 - 5-prime edge 
    GNTNTCATCA NCAAGACATA ACAATCCCAT GCTAACCTTC TTCTNTCTCA 
    CAACNTCTGA TGAGCANACA TCAACACATG AACAATAAAT TTCAAGTCAA 
    ATAAGAATCA ATCAATCAAA ACAGCAAAAC AAAATGTGAA TCAAAGATTT 
    AACCTCAAGG CGTGAAGTCT CATTTTGGTC TCCAATTTGT GACGATCTTC 
    CCATGTATTA GGCATTTTCT GATCGAATCC TAAGTGAATC GTCTTTAATC 
    CTGATTTTGC GATAAACGAA GCAGTCTCGT TAGTGATTCC ACCAGCTTCC 
    ACAACGATCC AAACCAAATC GTACGGAACA AGCATAAGCG AGTGCATAAC 
    TCCGGTCAAA TGAAGCGCCT GAAAAGTCCG TACATAAGTC GGCGTCACCA 
    CAATCACAGT CCTAGGGCTC CTCACACCGT ACATCGATTT CTGCTCTTTC 
    TGTACTCTCA CAAGCAACTG ATGAGCTCTC AATACCTCAA TCGGATTCGG 
    GTGAGGCCAT GGACGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26823412 [Map]; Strand: c
      • AT5G67230.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-3210-1 - 3-prime edge 
    ATGATAGCNA TATGCATAGT ATGGAGCTTT TTGATGAGAT TCAAACTGTG 
    AAATGGTTTG GTGCTCTATC TGTTGGTATA CTTGCTCATT CTGGTAATGC 
    AGATGAATTA TCATCGGTCT TGAAGAATGA ACAAGGGAAG AACAAAGAGA 
    AACCTTCAAT GCCAATCCAA GGTCCTAGTT GTAATTCCTC TGAGAAATTA 
    GTGGGTTGGC ACATTTTCAA CACACAGCCT TATGCCAAGA AGACTGCAGT 
    GTATATCGAT GAGAAAGCGC CTGTGATGCC TAGTAAGATG GAATGGTCAG 
    GGTTTGTGTT GAATT

AT5G67230.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9.
Computational Description
IRREGULAR XYLEM 14-LIKE (IRX14-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G36890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR