1. Home
  2. Mutant Lines
  3. 54-3218-1

54-3218-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14191980 [Map]; Strand: w
      • AT3G41345.1 - [+] show detail - transposable element gene
        Distance: -19819; Region: intergenic
      • AT3G41762.1 - [+] show detail - unknown protein.
        Distance: 3761; Region: intergenic
    2. Chromosome: 3; Position: 14192350 [Map]; Strand: w
      • AT3G41345.1 - [+] show detail - transposable element gene
        Distance: -20189; Region: intergenic
      • AT3G41762.1 - [+] show detail - unknown protein.
        Distance: 3391; Region: intergenic
    3. Chromosome: 3; Position: 14194645 [Map]; Strand: w
      • AT3G41345.1 - [+] show detail - transposable element gene
        Distance: -22484; Region: intergenic
      • AT3G41762.1 - [+] show detail - unknown protein.
        Distance: 1096; Region: intergenic
    4. Chromosome: 3; Position: 14195015 [Map]; Strand: w
      • AT3G41761.1 - [+] show detail - other RNA
        Distance: -902; Region: promoter
    5. Chromosome: 2; Position: 1048 [Map]; Strand: w
      • AT2G01008.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3218-1 - 5-prime edge 
    CCTTTGAGGA TGACGATTAC TCTTGAGAAT GTTTTGCTCA CAGGATATAT 
    TCAATTGTAA ATGGCTTCAT GTCCGGGAAA TCTACATGGA TCAGCAATGA 
    GTATGATGGT CAATATGGAG AAAAAGAAAG AGTAATTACC AATTTTTTTT 
    CAATTCAAAA ATGTAGATGT CCGCAGCGTT ATTATAAAAT GAAAGTACAT 
    TTTGATAAAA CGACAAATTA CGATCCGTCG TATTTATAGG CGAAAGCAAT 
    AAACAAATTA TTCTAATTCG GAAATCTTTA TTTCGACGTG TCTACATTCA 
    CGTCCAAATG GGGGCTTAGA TGAGAAACTT CACGATCGCC TCGACCAGGA 
    GTTGAAATCG TCGACCGGGA CCGAGAATTC GTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26458833 [Map]; Strand: c
      • AT5G66210.4 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon2 (CDS)
      • AT5G66210.2 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon3 (CDS)
      • AT5G66210.1 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon2 (CDS)
      • AT5G66210.3 - [+] show detail - calcium-dependent protein kinase 28
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-3218-1 - 3-prime edge 
    CTCAAAGGCA TTGTGAAACT GAACAACATT CTCGTGGCCA GAGAGAGCAA 
    TAAGAATCTG AACCTCACGC TTGACATCCT CAACAGCAAT AGGAAGAACC 
    ATCTGTGAGC AAAACATGGT GATGAGTGAC CTCAAAGCAG AGCAGAGGAT 
    GCAGTAAAAC CACAGAACAA TGTTGCAAAT GAAGGAACAG AGAAAGAGCA 
    CTAACTAAGT AAACAAAGTA CAAATTGGGA ATCAGTGTTA AACTAAATTA 
    AAAAGATCCG CAACTATTTT TCTGATGTGA ATCTAGTAGA TGGTAGTGGA 
    GGAAGATACC AACAACTAGT AAAAGGGGAA AAGAAACCCT AGTAAGGGCT 
    GGAAAAAGTG TACCTTAGAC TTATCGAGTC TTTTGACGGC GACGCGATCT 
    CCATTGGGTC TGTGGATGGC GACGTAGGTG TAGCCGAATT GACCATGGCC 
    GAGCAACTTG CCGATGGTGT AGTGATCGTG GAAGTCTTTG GAGTAGCCAA 
    AATCGGTACG CTTGCCGCAG GGGATGGAGC CGGTTCGGCG TTTGGTAGAG 
    GCCTTGGTAT CGATGGGAGT AGGAGCAGCC TTGGATTTGG TCTGACTGCT 
    TCGTCTACTG CTGCTAGCAC CAGTGACTCT AATGGCGGAG AAACAGACAC 
    CCATGGCTCT GATGAATCGA GAAAGTTAGA AAAGAAAGGG ATTAATAAAA 
    GAAAGAGATG AAAGAAGAAA GAAGAA

AT2G01008.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: maternal effect embryo arrest 38 (TAIR:AT3G43160.1).
Link
InterPro Scan - TAIR

AT3G41345.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 2.6e-18 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT3G41761.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT3G41762.1

Model type
Protein coding
Computational Description
unknown protein.
Link
InterPro Scan - TAIR

AT5G66210.1

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 124563 Blast hits to 121753 proteins in 3731 species: Archae - 157; Bacteria - 14240; Metazoa - 45960; Fungi - 14836; Plants - 27830; Viruses - 455; Other Eukaryotes - 21085 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.2

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.3

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, ATP binding, calcium ion binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 122907 Blast hits to 120110 proteins in 3700 species: Archae - 157; Bacteria - 14345; Metazoa - 44968; Fungi - 14295; Plants - 27583; Viruses - 455; Other Eukaryotes - 21104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66210.4

Model type
Protein coding
Short Description
calcium-dependent protein kinase 28
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 28 (CPK28); FUNCTIONS IN: protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 16 (TAIR:AT2G17890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR