1. Home
  2. Mutant Lines
  3. 54-3226-1

54-3226-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9570485 [Map]; Strand: c
      • AT1G27550.1 - [+] show detail - F-box family protein
        Distance: -1155; Region: intergenic
      • AT1G27560.1 - [+] show detail
        Distance: 370; Region: intergenic
    Flanking Genome Sequence: 54-3226-1 - 5-prime edge 
    TGTAAAGGTA TCCTATCGTA CAGAAGAAAA AAAAACATGA GAATATGTCT 
    GACATATAAA AAAATCAATC CACTGAAATA GTGGTTGCAT GCATACCCAA 
    ATCACATGTG TGTGCAAATA TGAATTATGC TGGTTAGAAG ATAATTACAA 
    GATTAAGCAT TTTACTACAA TTGCGTTTTT TATTTTGTAT GTAGAGTTTG 
    TGAAAGTCTA TAGACAACAA CATATCACAG AGTTCGCCAC GCATGTGTGC 
    CTCCAAACTT CCACTTACTA TTCATATAGT TCAAGAAGAG ATTTCACAAC 
    TCATTCTTGT TGATTCTGAA GTACATTATC CGAGATGTAA CTTTTGTCAT 
    ATATTTTTGT TGTTGTTGGT TGTTTTCATT TGATTATCCT AATGTATTTT 
    GATCAAAGAC AACTAGACCG TCAAGTCGTC AACAATAGTG AATAGTTGAT 
    CGTAACATAA TTCACATGCC GTATTTAAAT TTATATAAAA GTACCGAAAT 
    GGAGAATCTG GTGTGCAAAT GGTCGTACAT TTGAATAAAA GGACAGTTAT 
    AAGATTCATA TGATTAATTA ATTTTACCCA AAAAGATACG GGCGGTCGCA 
    GTAGCTAATG GCCCCGATAG TTAAGCCGTT CATGTCTCTG GATTTATACT 
    TTTTTTGGAT TTACTTCTTG CCTTAATCTT CTCGCAAAGC CACCATAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9570603 [Map]; Strand: c
      • AT1G27550.1 - [+] show detail - F-box family protein
        Distance: -1273; Region: intergenic
      • AT1G27560.1 - [+] show detail
        Distance: 252; Region: intergenic
    Flanking Genome Sequence: 54-3226-1 - 3-prime edge 
    TTAACATGGG CACTAAAGCA TAATCAAAGT CATAACGTTA GTTAACAAAG 
    CTAAACTAGC AATAACAAAT ATATAAGTCG GTTTACCAAA ACTAAACTGG 
    CATCCCAACA ACATGATCGT TGTAAACTTG TAATCCATAA CACTCTAACA 
    TCAAATGCCT TAGCAGACAC TTAGCTGTCG GACACTAAGT TTATGTTATC 
    ATCAACGTAC AAGTGAACTA TGAACATTTT CTATTTTAAA ATTTATTTAT 
    AAGGACAACA GAGCAAGACC AAAAGGGATC AACCATGAGC TAGGAAGGCA 
    AGAATCAAGA AGGAAGAAAC CACTGAGCAT CGTAGAAGTT GGAGTTGGAG 
    AGACCGTGGA AGCGTTTGAT GGTCTTTGTT ATAAGATTGA AGACACAGAT 
    GTCGAGGCAT GACGATTCTT TGTGACGGAT ACGATCACCA CGGGTGAAAT 
    AAATGGAGTT AGGCTCAATA CCAAGGGTAT GGTCAGCAGG CACAGTAATA 
    CCCAAATCAA GAAAGAGGGC CTCATCACCT AGAGAATGCA CCTCAAGAAG 
    CCAGGTGTCG AGGGTTTTCG GGTCAAGATC TTTAGGATC

AT1G27550.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 105 Blast hits to 103 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27560.1

Model type
Pseudogene
Curator Summary
pseudogene of F-box family protein-related
Link
InterPro Scan - TAIR