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54-3251-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20779906 [Map]; Strand: w
      • AT3G55990.1 - [+] show detail - Plant protein of unknown function (DUF828)
        Distance: -409; Region: promoter
    Flanking Genome Sequence: 54-3251-1 - 5-prime edge
    TTTATGAAAC AAAAATGTAA ATCAATCGGA AACTTTGGTG GTATACAAGT 
    AAATAATTTG GAAAAATACA TGTTTAAGCA AAAGTAATTG TTACTAATAT
    CCTAATTTCT ACAATTGTTG TTTCGATGGT CCCTTTCTTT AGGTGAGGAT
    TGAGACAATC TTTTAGAATC TTTGATTCCA CTCTTCGCTC CAAACTCTAC
    TTTGCTATAC AACAACTTCA AAATAGATTA GTTAAGCGAA TCAGGTTACA
    TTTTGAAGAA AACGATATAG AGAGAGCAAC TTTGTATATA ATTTTAAAAT
    TCTTCACCTG AAAGCCTTTA AAAACCAGTT CAAGATAAAC CCATCTCACC
    AAACTTTACT AATCATAAAA CTAATTAACG TCAAACAATA ACAATTTTTC
    ACAAATTTAA TTCTTTTATT CCTTTATTCC GTTGCTCTTA TATTTCCATC
    GATCTTTCTC CTTGTCTCAC AAACATTCTG ACATTTTAGA GAGCCTCGAA
    AGAGAATTAT TTTTTCTTTT TATTTTCGTT TACAAGTTTC AATTCTTCTC
    TATATATTAA AAAAAAAAAC ANATGCAACC TTGGANAAAA AAATTTCCAT
    TGTTCGAAAC AGGAGTTCCA TTGAAACAGA GGAAAAACAG NANTCTNTCA
    ATCTTCGNNG NANNCTTCTN TGTTTTCCTT TTCGGGATCT TNATGTACAA
    TGAAAACGNC AAGN

AT3G55990.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF828)
Curator Summary
Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
ESKIMO 1 (ESK1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, positive regulation of transcription, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 28 (TAIR:AT2G40150.1); Has 1336 Blast hits to 1309 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR