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54-3267-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11184956 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -442; Region: promoter
    Flanking Genome Sequence: 54-3267-1 - 5-prime edge 
    NCTNCCGGGA AGNACTACGN GNNGCATCCC TCTTTNNTGT TNAACCNTTN 
    ACTTTTNNGG TTAAAACNTT ATGAATNCAT AACTNTTAGA CCGTGAGGNC 
    ANACTGNGGC TATGTGATAC CTTTTTCGGA AAGCCCAAAG ACAGCCCTCC 
    GACGAAAGAA GCAGGACAAT GGAACTTTTC CATTGACTTT TTGTCGACCC 
    CAAATTTTGA CATTTAAGTA CTTTTTCGGG CATTTTCGTG ATTTGGGCTA 
    TATTACGGAC CCAAAATTAC TTGTTCAAGC ATTGTTTTCG AATTTTTTCA 
    TGCATCAAAG CCCGTTAAGA CTAGATGGGG TATCCCTACA TAGCGGGTGG 
    GACCCACGGC GAATGGTTCA TCAAGTCTTC AAAAAAGAAT ATATACGATT 
    GCATTGCATA TACTAACGGA TGCGATCATA CCAGCACTAA TGCACCGGAT 
    C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185845 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1331; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4698; Region: intergenic
    Flanking Genome Sequence: 54-3267-1 - 3-prime edge 
    CCGGGAGGNC ACCCATCCTA NTACTACTCT CGCCCAAGCA CGCTTAACTG 
    CGGAGTTCTG ATGGGATTCG GTGCATTAGT GCTGGTATGA TCGCATCCGT 
    TAGTATATGC AATGCAATCG TATATATTCT TTTTTGAAGA CTTGATGAAC 
    CATTCGCCGT GGGTCCCACC CGCTATGTAG GGATACCCCA TCTAGTCTTA 
    ACGNGCTTTG ATGCATGAAA AAATTCGAAA ACAATGCTTG AACAAGTAAT 
    TTTGGGTCCG TAATATAGCC CAAATCACGA AAATGCCCCC NNAAAGTACT 
    TAAAGGTCAA AATTTGGGGT CGANCCTTCC NGGGCCGNNN AGGNGGCCTN 
    ACCNNNTTAT TTANNAGNGG TNNTNNCCTN GGGNANAAAA AAAAAGNNTN 
    GGATGGGGGG GGNGGCCCNA AAAAAANNAA AANNNAGGGG GNCTTTNTTT 
    AANTTNNNGN CCAAANNTNN TTTTTTTTNN NGGGGGGGGG AANAAAAAAA 
    NCCCTTTAAA TTTTTTTCCC ANNTTTTNNN NAAAAAAAAA AAAAAANNNN 
    NTTAAAAAAA ANCCGGGGGN NAANAAATTT TTNNTTTNNN GGGNNCGGGG 
    GGGANAAAAA ANATTTTTTT TTTNNNNNAA AAAAAAAAAA AAAANCCCCG 
    CGGGGNAAAC CCNCCCNCCC NTTTTTTTT

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR