1. Home
  2. Mutant Lines
  3. 54-3270-1

54-3270-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20682505 [Map]; Strand: c
      • AT1G55390.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3270-1 - 5-prime edge
    TGGGGATGGT GATGGTGGTG ATGATGATGA TGATGATGAT TTTCAACAAG 
    ATATTTATTA TCGTGTAAAT GGTTATGATT ATTATTATAA TAACTATGAT
    GATGGAGATA ACGCTTGCCT ATGCCTCTAT ATCCGATGGA AATGATCACC
    GCAAATGCAA ATGTTGTCAA GATCCTTTAA AAAAGGTACA TTATCATTGT
    TCTATCTGCA AGTTCAATCT TAACCTGAGT TGCTCGATGA GACCACCACC
    TCCCACTATC TCACATTTGA AAAGTCATGA GCACACCCTC ACCCTATTCC
    CTATACGACT CCCTTCACCA TGTGATGCTT GTGGTTTGTC TCTAAGCGAC
    ACCAAAGACC TCATCTACGC TTGTCTCCCT TGCAGCCACA TGATCCATAG
    ATCATGTATT TATTTACCTC GTGTCATTCA GATCACCCGA CACCCACACC
    GTCTCTCTCT CACTTCCTCC CTTCAAGTAG GTGATTTCTC TTGTGGAGTT
    TGTCGCCAGA CCGTGGACAT CAACTACGGG CACTACTCTT GTAACAAGGG
    ATGTAACTAT GCTGTCCACT CGAAATGTGC AACAAGGGAA GATGTGTGGG
    ATGGAAAAGA TCTTGAAGGA GTGCCTGAAA AACCCGATGA AGATATCGAG
    CCATTTGTTA GGATTGATGA NGAGACAATT CAACATTTCA GTCATCATGA
    GC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20682578 [Map]; Strand: c
      • AT1G55390.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3270-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATCACTGTCA CCATCACGAT CTTCACCAAC ACCATCACCA TCATTAACAA
    TAACATCATC GTCAACAAAA TTGTTATCTT CATCATCATG GCCACCGTCT
    TCAGAGTCAT CATCATCGTC AGTTTCGTTT ATCGATCTTT CTGAAGCCGC
    GGAGCCGTCG TCGGTATTGC GGGGTATCTT AGAAATATCA AAACCAGGTG
    GTAAGGAGAT GAGGGTGAGA AGGTGAGAGG GGTGAAAAGG GTGTCTTATC
    ACCGGCGGAA GGAGGTGACA GCCTCTGTGG AATT

AT1G55390.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55420.1); Has 11745 Blast hits to 4394 proteins in 388 species: Archae - 57; Bacteria - 4511; Metazoa - 1535; Fungi - 633; Plants - 1887; Viruses - 132; Other Eukaryotes - 2990 (source: NCBI BLink).
Link
InterPro Scan - TAIR