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54-3270-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20682505 [Map]; Strand: c
      • AT1G55390.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3270-1 - 5-prime edge 
    TGGGGATGGT GATGGTGGTG ATGATGATGA TGATGATGAT TTTCAACAAG 
    ATATTTATTA TCGTGTAAAT GGTTATGATT ATTATTATAA TAACTATGAT 
    GATGGAGATA ACGCTTGCCT ATGCCTCTAT ATCCGATGGA AATGATCACC 
    GCAAATGCAA ATGTTGTCAA GATCCTTTAA AAAAGGTACA TTATCATTGT 
    TCTATCTGCA AGTTCAATCT TAACCTGAGT TGCTCGATGA GACCACCACC 
    TCCCACTATC TCACATTTGA AAAGTCATGA GCACACCCTC ACCCTATTCC 
    CTATACGACT CCCTTCACCA TGTGATGCTT GTGGTTTGTC TCTAAGCGAC 
    ACCAAAGACC TCATCTACGC TTGTCTCCCT TGCAGCCACA TGATCCATAG 
    ATCATGTATT TATTTACCTC GTGTCATTCA GATCACCCGA CACCCACACC 
    GTCTCTCTCT CACTTCCTCC CTTCAAGTAG GTGATTTCTC TTGTGGAGTT 
    TGTCGCCAGA CCGTGGACAT CAACTACGGG CACTACTCTT GTAACAAGGG 
    ATGTAACTAT GCTGTCCACT CGAAATGTGC AACAAGGGAA GATGTGTGGG 
    ATGGAAAAGA TCTTGAAGGA GTGCCTGAAA AACCCGATGA AGATATCGAG 
    CCATTTGTTA GGATTGATGA NGAGACAATT CAACATTTCA GTCATCATGA 
    GC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20682578 [Map]; Strand: c
      • AT1G55390.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3270-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATCACTGTCA CCATCACGAT CTTCACCAAC ACCATCACCA TCATTAACAA 
    TAACATCATC GTCAACAAAA TTGTTATCTT CATCATCATG GCCACCGTCT 
    TCAGAGTCAT CATCATCGTC AGTTTCGTTT ATCGATCTTT CTGAAGCCGC 
    GGAGCCGTCG TCGGTATTGC GGGGTATCTT AGAAATATCA AAACCAGGTG 
    GTAAGGAGAT GAGGGTGAGA AGGTGAGAGG GGTGAAAAGG GTGTCTTATC 
    ACCGGCGGAA GGAGGTGACA GCCTCTGTGG AATT

AT1G55390.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G55420.1); Has 11745 Blast hits to 4394 proteins in 388 species: Archae - 57; Bacteria - 4511; Metazoa - 1535; Fungi - 633; Plants - 1887; Viruses - 132; Other Eukaryotes - 2990 (source: NCBI BLink).
Link
InterPro Scan - TAIR