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54-3277-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21452550 [Map]; Strand: w
      • AT1G58020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 4; Position: 11046126 [Map]; Strand: c
      • AT4G20520.1 - [+] show detail - RNA binding;RNA-directed DNA polymerases
        Distance: 0; Region: exon1 (CDS)
    3. Chromosome: 4; Position: 11114104 [Map]; Strand: w
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-3277-1 - 5-prime edge 
    AACTCATCTC CGGGCCCGAC ACACAGCACA TTATCCATCT TACCCAAACT 
    TCGGGGAACC CCGCAGAAAT AAGTGTATCC TCCAGATAAT CCCATCGGAT 
    C

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11113989 [Map]; Strand: w
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-3277-1 - 3-prime edge 
    GTATGAGTTT GTTGTGGAAT GGAGAGAGAA CAGACTCCTT CAAGCCGTTA 
    CGGGGCCTCC GCCAGGGTGA TCCCTTATCT CCGTATTTGT TTGTGCTATG 
    TATGGAGAGG CTTTGTCACT TGATTGAGCG ATCGATTGAT AACAAACAGT 
    GGAAGCCCAT TAGTTTGTCT CAAGGCGGTC CCAAGTTATC TCATATCTGT 
    TTTGCTGACG ATCTAATTTT ATTTGCGGAG GCTTCAGTAA TGCAGATAAG 
    AGTGATTCGG AAGGTGCTGG AGACATTTTG TATAGCCTCT GGTCAAAAGA 
    TTAGCCTGGA GAAGTCAAAA ATATTTTTTT CAGGGAATGT CTCACGTGAT 
    CTGAGCAAAC TGATAAGTGA GGAGAGCGGG ATTAAAGCAA CAAAAGACTT 
    GGGTAAATAT CTTGGGATGC CAGTACTTCA TAAACGCATC AATAAGGATA 
    CTTTCAGTGA ACTTTTGGAG AAGGTCTCTT CCCGTTTGTC GGGTTGGAAG 
    GAGAGAACTT TGAGTTTTGC GGGACGGATG ACGCTTACCA AAGCTGTATT 
    ATCATCTATA CCGGTCCATA CAATGAGTTC TATTGCGCTA CCACAATCGA 
    CTATTACTCG ATTGGACAAA GCT

AT1G58020.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.7e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT4G20520.1

Model type
Protein coding
Short Description
RNA binding;RNA-directed DNA polymerases
Computational Description
RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR