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54-3279-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1972560 [Map]; Strand: c
      • AT3G06437.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -105; Region: promoter
    Flanking Genome Sequence: 54-3279-1 - 5-prime edge 
    ATTGCCCTAC TACATCACAT TATTATTTAA ATTTGTCTTC AAGTTTTTAT 
    TTCGCATAGC ACATATATAA AGAAAACGCT TCGTTCAAAC TCGTCTGTGA 
    ACTCCATAAA ACTTATTAAA AAATCCGTCC AAAAAAATAT ATAGTATAGT 
    TTGGATCGCA TGAAAACATA TCTAAACATA AGTCTTTGTT AGGGGTCGGA 
    TTGGGCCCTT CTCAAGTAGT TCATCAGCTC GCCCTTCTCA AGAAGCTCGT 
    TAGCTCGCTC CACTTCGTCA AGCTCTTCAG ATCGCCTTTA AGCTCTTCAA 
    ACTCGACTCG TCCTCAAGCT CCTCAGCTCG TCTTCAAGCT CTTCCCATCA 
    CTCAGCGACC ATTTCCTCGC CTAGCTGTCA GCTAGTCAGC TCGTCCAACT 
    CCTCGTCTAG CTATCAGCTC ATCCCTCGTC AACTACCTGC CGACCTACCT 
    CCAATGACGG CCTAGCTCAC TTATTCTAAT ATGAACTACG TGTGGCTTGA 
    TCCCTTTCTA AGGGTNCGTN GGCAACCTTT TACAAGGTTC AGCTATAAAA 
    CGAATAAACT CTATTCTTCC TCGGACATCA AGTTCGTCTT CCGGCCTCAA 
    GCTCGCCTTT CATCTACAAT CAGCTCGNTC TTACTCCATC TATGCTCGNN 
    GAAGAAATCA TCCTTTGNAA TCCGGGCAAA TTCGCCTAAG GCGCAGGCNC 
    GTCTTTATAN AAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1972676 [Map]; Strand: c
      • AT3G06437.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -221; Region: promoter
      • AT3G06440.1 - [+] show detail - Galactosyltransferase family protein
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 54-3279-1 - 3-prime edge 
    AGGGCAATTG CATAATCGAT AAATCCGGAT AAGTGTGCCC CGATACAACA 
    AAAGCAACAA CGTTTACGAG GACAATGAAT AAGACACTAA TGGCACCTTT 
    GACACGCTCC TGGCCTATAA ACTATGGTTC GAATATGTTT GTAGATATGC 
    NTGATTGAGA GAATCTACAA AGACAGATAA TAGCCAATAT ACTCTGACAT 
    ACTCGAGCCA GTGTGTCTTT AACTGGGAGA ACTTCTTCCT GAAGTGTGAA 
    ACAGAACCAG AAAAGTTACA TACGTACATG CTCGAGAGAT TTATTCGCAG 
    CAAATAGATT GGTTCTCTTT TTGCAGCTTC TCCCAAAGAC ACAAAATTAG 
    TCTAGGAGTT TGGTAATGAA CAAGAATGTA ATTTGATTTA CAATCACTGT 
    TATGAAATCT TTTGTCATTG ATGTACTTCA CTCTTTTTAT CGTCTGGTTG 
    AATTGTTGAA TCCATATCCC CATCGCCACA TCTTCCAGCT TGAAAAGCT

AT3G06437.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G06440.1

Model type
Protein coding
Short Description
Galactosyltransferase family protein
Computational Description
Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: galactosyltransferase1 (TAIR:AT1G26810.1); Has 2377 Blast hits to 2343 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1703; Fungi - 5; Plants - 611; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR