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54-3281-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26438869 [Map]; Strand: c
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: -105; Region: promoter
    Flanking Genome Sequence: 54-3281-1 - 5-prime edge 
    AGGAAGGTTC ATGTATTTTT CAATCGACCA TTATACTGTG TTAATGGGCC 
    TGTTATGGAA GTTTTGGGTA TATAAGGCCC ATTTAAAGGA AATGATGAGT 
    GCGCGATTTG TCTCTCTTCT CAAAAACTTG AAGATCTGAG TAGAGTACTT 
    CCTTCTTCTT TTTTTTTTTT TTTTTTTTNG GNNTNGGGNN GGNCNAAAAA 
    NGGGGNNTNC NTTTTTTNNA ANTNNCCCCN NAAACNAAAA CNAAAANAAA 
    AANNGGGNAA AAAAAGGGGT NAAANCNAAA NNNCNANTTN NNNTTTTNCC 
    CCCCNNGGGN CCCNTTTTNA ANNAAAAANC CCCCNTNAAN CCCCCCCNAN 
    GGGGAACCCC CCCCNGGGGG NCCCNGGGCC CCNNCCCCNN NNCCCCCCCC 
    NNAAAAAAAA ANCCCCCCCC AAATTTCCNN CCCGGGNCCG NANNCCNCNN 
    NGNNNNNANA AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26438991 [Map]; Strand: c
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: -227; Region: promoter
    Flanking Genome Sequence: 54-3281-1 - 3-prime edge 
    CTCCCGCGCT TTCTAACTAA CCAAACCGTT GATGAATGAA TGATTTAAAA 
    CATTGTACAA ACATATTGGC GCAATCATCC CACAAACAAC TTTCTTCTTC 
    TACGTTGTTT CTGATAAAAC TGAACCACAA ATGTACGAAT CTCCATGGGA 
    CCAAGCTCTA CTACTAAAGT CGACTTGTCA ACGGGTCCGC CTCTTAGCGG 
    GGAAGAAGGT TGTTCCGCTT CACCCTCCAC TTTCCACTTC ATCTTCTCCT 
    TCATCTTTAC TTTCTCTTGA TTTGCTGACA AACTCATTTC CGTCACTTCT 
    TTGATCTGCA AAAATAGTAT GGATTCATTC ACCACCTAGC TAGCTAGTAT 
    GTTAGAGTAT CTCTCCACAT GTAGATGAGC AAGTGTGTTT CTTACCATTT 
    TTCCGGAAAA CAACTTCTTC AACTCAACTT TAGCGATTTT AGAGTAATCA 
    TTGTCTTCTC CCGCCTGTAA GCAACGCTCA ACACTCAATT ACTGTCATGT 
    ATATCCCAAT TCAAGAACAT CTAACTGTAC GTACCTCGTA GAGATGAGCC 
    AGGCGAAGAA GGACGTTCCC GAGATCCAAC TCCTCAAGAG TGATGAGAGC 
    AATGTTTTGA GGCAAGGTGT AGAGATGATC CATGGCATAA CCTTTCACAG 
    TATTTGAGGC TTTCCATTTC TCCTTGTTCT CGTGTGCGAA TGCCATTAGA 
    AGANGTGAGT ATATTTCCTG TCCAGTC

AT5G66140.1

Model type
Protein coding
Short Description
proteasome alpha subunit D2
Curator Summary
Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
Computational Description
proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR