1. Home
  2. Mutant Lines
  3. 54-3304-1

54-3304-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051665 [Map]; Strand: w
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3304-1 - 5-prime edge 
    TCTTCTTCTA CTAACATCAA TTTCTCTCGA GAAAAACTGA ATCTTCGCTG 
    AAAAAATGTC GGGTCGTGGA AAGGGAGGAA AAGGTTTGGG TAAAGGAGGA 
    GCCAAGCGTC ACAGGAAGGT TCTGAGAGAC AACATCCAAG GAATCACCAA 
    GCCTGCGATC CGAAGATTGG CTCGTAGAGG TGGAGTCAAG CGTATCAGTG 
    GTTTGATTTA CGAAGAGACT CGTGGCGTTC TCAAGATCTT TCTCGAGAAC 
    GTGATTCGTG ATGCTGTCAC TTACACCGAG CACGCTAGGA GGAAAACTGT 
    GACCGCCATG GATGTTGTCT ACGCTCTCAA GAGGCAAGGA AGGACTCTTT 
    ACGGATTCGG TGGTTAATTA GAGTTTTTCA GATCCGCGTT TGTGTTTTCT 
    GGGTTTCTCA CTTAAGCGTC TGCGTTTTAC TTTTGTATTG GGTTTGGCGT 
    TTAGTAGTTT GCGGTAGCGT TCTTGTTATG TGTAATTACG CTATTTCTTC 
    TTGCTTCAGC AGTTTCGGTT GAAATATAAA TCGAATAAAG TTTCACTTTA 
    TCAGCGTTGT TTTAAATTTT GGCACTAAAT TGGTTAAAAT TGCTTCAATA 
    TTGTATCTAA ATAGAAGAGA CAACATGAAA TTGGACTTTT GAGCTCAAAT 
    CTTCGACATT TATTTCCTGA TTTCACGATG GATGAGGAAA ACGAAAGGGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051549 [Map]; Strand: w
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: -3; Region: promoter
    Flanking Genome Sequence: 54-3304-1 - 3-prime edge 
    GAAGAAGAAG AACGGTTCAG AGTAGATTTG GGTGAGAAAG ATGTGAAATT 
    GTTTTTATAG GCAAAGACGG AGAGTCTATT TTTTGAGCAA TCAGATCGCA 
    TAATAGATCT AACGGCTGAG ATATCGATCC GTGTGTACAA TAAAATGATG 
    TATAAACCGT CGATCTGTTT TAATCGACGG TTCATATTAG TGATCCGCGT 
    GATGGCAGTG ATAGCCACTA AGAATCGTCT TTTGTTTTAC ATGTGGCGCC 
    ACAAATTAGG GTAATGAAGC GGCAATATTT TGGAACTCGG AAAATAAAAT 
    TGCGCCATCA CATTATTTGA AAATTTTCAC ATGCTTTTAT TTTAAAAACC 
    CACGAATTAC AAGTTACAAC CGAAAAAGAT TTATAACATA GTGATTTATA 
    CTAATTTTGT AGTAGCTTAA TGTATATTGA TACTGGAAAA ACAATGACAA 
    TCATATGTTA GTATTATCAA GTTATCGTAT TGATATTGAT ATTGGAACAT 
    ACAATGGGTA TTGCCTTCTT TCGACCATAA ATATCACCAA ATTTACAAAG 
    TTTGTGTATA CCAAGTTATC AATTGTAAAT GGGATGTCAA CATTTTAATT 
    TCCCTTTGAG AAACTATAGA CCACAAGAAC ACACTTCAAT AGATAAAGTA 
    ACTATTTACA TAAGAGGNTT TAAAATCACA TTAACAAAAA TAATTACCAA 
    CCGGCACTCA CAAATACNAA CAG

AT5G59690.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: thylakoid; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR