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54-3305-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6781141 [Map]; Strand: c
      • AT3G19540.1 - [+] show detail - Protein of unknown function (DUF620)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3305-1 - 5-prime edge 
    GATCAGAGGA AGAGACATGA ATAGGAGCAA GAGGAGCTCC CATTACACCA 
    AGAAGAAGTC TCAGATCATT TCTCCTATAA GCCGCCGTCG CAGCAACAGA 
    CGGAGCACGA GACAGCTGCC CTTTAACCCA GTGACCTAAA CCCGACCCGA 
    GTCGTTTAGA TTCTCCTATA TTACCACCTC CTCCTCCTTC ATCTGGATCA 
    GGACCTTCCA TTACAGGTCT CAAACTTCCG GATCTCCCAA TTAACTGCTC 
    TGGTTGCGCT AAATAGNAAC CTCCGCCACC ACCACCACCG CCTCCTCCAG 
    TTAAGTTCTT TCTTCCCCAA GTGAGAGCTG ACATGGGTGA ACTAGACCTA 
    GCGGGACTGN CGGAACGAGA CCTTGCTCTG GATCGTGACG GCGAAAGACC 
    TCTCACAACT TCGTGTNTGA NAGCAGAGAA AAAGCCNTGT TTTTNNNGNA 
    NAAAAAAAAA ACCTCTGTTN CTGCTTCACT AANNNNNAGN AGGGGCGTNN 
    CTTCTTCGNA ATACANAAAN GGGTTTTCAA CGAGAGAAAG AGGGNGNTNC 
    ANCCCCNNAA NAAAANNNGG NGNTNTNTTT TNTTTNTTTC TCTTNTNNNN 
    ANGGANANAA NNNTNNNNNA AAAANNTNTT NTCTTTTTTT TNTNANAANA 
    AAAAAAAAAN ANANATTTTN TTTGNTTTTT NNCCCNNGNA NNNNNNNGNN 
    NTNCNNNNCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6781257 [Map]; Strand: c
      • AT3G19540.1 - [+] show detail - Protein of unknown function (DUF620)
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-3305-1 - 3-prime edge 
    CTCTGATCCT TTGCCTCATC TTAGTATCAA AAACACTCCA ATCGTTAGTC 
    TCACTCTCTC CTCCTTCTTC TTCCTTGTAA AGTTCAGATT TTTCATCATT 
    TTCCTTCAGA TTTGCAAGTT CATGACTTTG AAATCTTTGA TAGTGGTGGT 
    TGGTTTTATT AATCGAATTT TCTTTACTTG AGAATGTTTT TCATTGGTCG 
    TTGGTTGGTG GAAATTGATG TCATATTCTT TGGTGGGATT TGATTTTTCT 
    TACAAACCAT TGGAGTATTA AACCAAAGTT TTGATTTTTC TTCTTTGGTT 
    TCTTCTTCTG AGCCTTATTT GAACACTTTA CTGTTTATCA TTTTTACTGA 
    ATCTTCTTTG TTCTTACTAT TTCTTGCAGG AAACATCATC TGCTCAGTAT 
    ATTCTTCAAC AGTACACTGC AGCTTCTGGT GGTCAGAAGC TACAAAACTC 
    CATTAAAAAC GCTTATGCGA TGGGGAAGCT CAAGATGATT ACTTCAGAGC 
    TTGAAACTGC TACAAGAACC GTTAGGAATC GAAACCCATC TAAGGCTGAG 
    ACTGGAGGTT TTGTTCTTTG GCAGATGAAT CCAGACATGT GGGTATGTTG 
    AGCTTGCTGT TGGTGGTAGT AAGGGTTCGT GCTGGCTGCA ATGGCAAGCT

AT3G19540.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF620)
Computational Description
Protein of unknown function (DUF620); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT1G49840.1); Has 219 Blast hits to 218 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR