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Mutant Lines
54-3316-1

54-3316-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 6313316 [Map]; Strand: w
- AT3G18380.1 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
  Distance: 0; Region: exon1 (5UTR)
- AT3G18380.2 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
  Distance: 0; Region: exon1 (5UTR)
- AT3G18380.3 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
  Distance: 0; Region: exon1 (5UTR)
- AT3G18390.1 - [+] show detail - CRS1 / YhbY (CRM) domain-containing protein
  Distance: -169; Region: promoter

TTNTAACCCG NGGTAAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
TTCCCATCCT ACTNNAANGA NTGCGGNTNT ACTCAGACCC GACTCCGTCG 
CTTATATAAC TTTCNACCTG TGTAATTTTN TAAAACTNAN CATGTATTAA 
TGGGCTTTTA AAACCCATTA AAGGCCCATT TTTTTAAAAC CGATACAAAA 
ATCTTATCCG TATGGTCGAN TAAATCCAGC TTTATCCGCC TGAAACTTAT 
TTCTCAGTAT CCAAAACGAT GGCGAAGAAG ACACTTCGCT GAAGCTTTTT 
TTTCCAAAAA TATTTCTTAG TGTCNGTCAA TGGCTTTGGC TCCACTTAAT 
TTTACGGAAA TGCCACTGAG AAGCTCTCTT CCTCTGACCT CTANCTCTCG 
CTATTGTNNC CTCTCCTTCG CTTCACGCAT TGCTCTTCTA TTNGNGGGGT 
GTGAAACCCT CGCGTCAACA AATNTGTTCG GCCATTCTCT TCGCTGCNTA 
CAAGCCNAGC GTTNGCAACA ACNNGGGAGC AATAACNNTT CGGNGGATTN 
ANATCNACGG TANTNAATAA ACCTNACTTC CTCNCTTGGA TNGANAAGGG 
GGGCTCCCGT NNNTTCTNNC NGGAGNCGGG CGGGGNGANA NNTGCCCGGG 
AAGGAAAGGN GGGNGGAAAT CCCNCCGGCG CGGNANTANA AATNCCGGTC 
CTNGCGGNGG AAAGNAAACC NNANACCAAN ANCTTTGNTN TTTGGGAAAA 
GTGNCCNCNG GCNCCNANCC CNNNNNNGAA ANGAANGTNN NNNTCCGATA 
NANNNNATTT AANG

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 6313297 [Map]; Strand: w
  - AT3G18380.1 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
    Distance: 0; Region: exon1 (5UTR)
  - AT3G18380.2 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
    Distance: 0; Region: exon1 (5UTR)
  - AT3G18380.3 - [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA bin...
    Distance: 0; Region: exon1 (5UTR)
  - AT3G18390.1 - [+] show detail - CRS1 / YhbY (CRM) domain-containing protein
    Distance: -188; Region: promoter
Flanking Genome Sequence: 54-3316-1 - 3-prime edge
```
ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
CACCGGCCGT ACTAGAGAGA TTCACCGTGA ATTCGAATAT TAAGTGAGAG 
AAGCTCCGAT TGATTTCAAT TTCTGCCGCC AATTTTTGTT TTTTCTTCGG 
TGAGACGAAG AAGATACCAT GGGTCGA
```

AT3G18380.1

Model type: Protein coding
Short Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Computational Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 91 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G18380.2

Model type: Protein coding
Short Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Computational Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G18380.3

Model type: Protein coding
Short Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Computational Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2).
Link: InterPro Scan - TAIR

AT3G18390.1

Model type: Protein coding
Short Description: CRS1 / YhbY (CRM) domain-containing protein
Computational Description: embryo defective 1865 (EMB1865); FUNCTIONS IN: RNA binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3B (TAIR:AT4G14510.1); Has 1281 Blast hits to 1142 proteins in 135 species: Archae - 11; Bacteria - 10; Metazoa - 285; Fungi - 118; Plants - 447; Viruses - 43; Other Eukaryotes - 367 (source: NCBI BLink).
Link: InterPro Scan - TAIR