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54-3325-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5303464 [Map]; Strand: w
      • AT1G15420.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR0071...
        Distance: -74; Region: promoter
      • AT1G15430.1 - [+] show detail - Protein of unknown function (DUF1644)
        Distance: -853; Region: promoter
      • AT1G15430.2 - [+] show detail - Protein of unknown function (DUF1644)
        Distance: -995; Region: promoter
    Flanking Genome Sequence: 54-3325-1 - 5-prime edge 
    CTTGACAGTT CACACAACAA CTAAAAGCTA CGACGGGTCG GGTCTAAATT 
    GGGTGAACCG AAACGCTTTT TTTTATTTGT TGGGCCGACT TAACCCAATA 
    GTTGGGCTCG TGTAATCTGT TCCAATATCT TCTTAATATT TTATTTCCTC 
    AATAATTATA CTTGTTTTAC TAAGAAAAAG ATTGAAATAT TATAGTTGGA 
    AGGCTGTCGT TGATATTGAC ACGGCCTCTA ATACCTTGGA CTTGACTGCA 
    TAATAGTGGC AACTGGCAAG ATTTGGGATT AGGATTGTGG TATGTGTTTT 
    TACCTCTTTT ATTTGCTAGA AAAGTAATTG CACGTAAATG GAATAGATAA 
    TATGTATATA CATGCATCAA AAAGAAGAAA AATACNATCT GTATATACAT 
    AGATATGACA GCTAANAACA AAAATACTTA TTTNNTTTTT TTNANACCAN 
    TNNTNGGGGC CGATNNACTT NNATTTTNTT AGGAANGNNA AATNNNNGAT 
    NCTTTTCTTN GAGCNNAAAA AAAATNGAAN NTTTTGTTNA AAANTNAAAA 
    ANANTNTNNT CCTNANAAAA AAAAAAAAAA ANATTNCAAN NCNNGANGGG 
    CNAAANNAAA AACNANNTTT TNTTTGGNNT TNCCNGGGAA AGAANNANNN 
    NANTNTTNCC CCCCNGNNNN GNGAAAAAAA AAANANGGGC CNNTTNTTTT 
    TNCCCCCNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5303348 [Map]; Strand: w
      • AT1G15420.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR0071...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G15430.1 - [+] show detail - Protein of unknown function (DUF1644)
        Distance: -969; Region: promoter
    Flanking Genome Sequence: 54-3325-1 - 3-prime edge 
    CTGTCAAGTT GTTGCGGCTA GAAGTAGAAG AAGAAGAACC CTAACTAAAC 
    CCAACGCCGG CCTCTCTTTC TCTCTCTCCC CGCTTCTCTC GTCGATCGCT 
    GACCATGGCC AAGGACAAAC TCAAGCCTCT TCTCTCCTCT GATGCTGCAG 
    GTTTCCTTCA TTCTATCTCC CTTTTCCTTT TCCTATTACT CAGTTTTGTT 
    GTGAGCTCAT AGCTCTTCTC TTGTGTTTTT ATGAATT

AT1G15420.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15430.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1644)
Computational Description
Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1); Has 273 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15430.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1644)
Computational Description
Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR