1. Home
  2. Mutant Lines
  3. 54-3332-1

54-3332-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 152490 [Map]; Strand: c
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -578; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-3332-1 - 5-prime edge 
    CCTAACATAT CCATTTGTCC CGCTCCAAAC GCTTGTCCAC ATAACGTTTC 
    CAACGCACTC GCCATTCCCA GCTGCAGTTT TTGTCTAGAA AGTTAGAGAA 
    AACGCAAGAA ACAGAGGAGG AAAAAAGCAG AGTAGAGGAA GGTTATTTTA 
    ATCACCAAGA AACCAAAGGA GAAATTAGAG ACGACGGAGA GAGCGATGGC 
    GACGGCAGAA AGCTCAAGAT CGCCGATATG GCCAACGAAG ATGCTTGTGA 
    AGGAGTTAAC ACCGTAATTA CAAAGAATGT TGAAAGCTAT AGGTGCAGCT 
    ATTTCCCAAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 427551 [Map]; Strand: w
      • AT4G00990.1 - [+] show detail - Transcription factor jumonji (jmjC) domain-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-3332-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCGTCTTG 
    ATGCAGTCAA AGCAATAACA CTTCTTGTTA CACTTTGAAC AGAAGATAAG 
    ATCACTCTCA CTCGTAAAGA TCTTACAATG ATGACACGTC GAACCCAAAC 
    ACTTTCTGCT TCCGTCAGAC TTAATATCCT GGGAGAATTA GGGTTCCAAA 
    AACATATTCT CATCACATCC GAACAAATAA AATTTACCAA ATCGAAATAA 
    ACAACATTCA GACAAATTTT GCAGCTAAAT AATTGCATGA GAAAGGAATT 
    TTTAACAACT CCACAGAATC ATGAGAATT

AT4G00342.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00990.1

Model type
Protein coding
Short Description
Transcription factor jumonji (jmjC) domain-containing protein
Computational Description
Transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 966 Blast hits to 671 proteins in 113 species: Archae - 0; Bacteria - 8; Metazoa - 538; Fungi - 54; Plants - 301; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Link
InterPro Scan - TAIR