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54-3349-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23170786 [Map]; Strand: c
      • AT5G57180.2 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon3 (3UTR)
      • AT5G57181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -276; Region: promoter
    Flanking Genome Sequence: 54-3349-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TAAATCTAGG CTCTTTTATC CTTGTTATCT 
    TTGTCCACTT GGAGTGCTCT CATTGGGCCT TCTCACGAAT CGTCCCTGTT 
    CCCACATCCC ATCACCAACC ACAAAAAGAA AAGAAAACAT TAATATTAGG 
    TTCTTGTCTT AATCAAATCT AATGTATATA TCCCTAGCCC TTGACCTCAA 
    TCTAACGTTA TTAGTTAGTT TTGTTTCCTT TAGATGACAA TTCTTAATAT 
    ATTTAACCTT TGGTTTGGTT TTAAATCTTT TTGTTTGGCT TGTGGTACGT 
    AGTTTCCTTT ACTTGTTCGG TTTGGTTCAT TTGGAATAAA GATACCCAAA 
    AGAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23170784 [Map]; Strand: c
      • AT5G57180.2 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon3 (3UTR)
      • AT5G57181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -278; Region: promoter
    Flanking Genome Sequence: 54-3349-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATTTTATCTT ATCTTTTTTT TTNATCTTTG GTTAATTCCT NGTTTNATTT 
    TNGTTTCTAA AATTTNGGCN CCCTCCTTTT TNGTTTCTTT NAAGTNATGG 
    CCCCTTNTNG GTTAATAATT NAAATTTTTN GATNAGGGGG ANATTTGATN 
    GAAAAAGNGA GGGATCAAAN CTAATAAAAG TTTTNGTTNT TAATANAAAA 
    ANCANANCTN TTGAAATTTT AATGACTCAA NAANCAATNG TAGNCANANA 
    CTNGGCTCAN CANCANCAGT ANCAAAAANC AANACNTGGA TTATTCNCCA 
    ATCCCAANGG CTCAAACTNT GTNGCANCCT TGTNCNCCTG TNGTTTCGTN 
    GCCCATNGCT TNTTTGAGTC ATCAAANCCG GGGACAAATC ATNGATNCCT 
    CTNAATATCN GTTTTTGCCN ANCCAAATTT CCTTTCCCAA TAAAANCNTT 
    TTANANAAAA ANCNTNTNGA ATTAAGGGCA AAAATANCTT NTAGGACGNG 
    TTATATNATT TTTGAATGGT AGCTNNTNCT AAATNCCATT TTATCTTTGA 
    CCAANAATCG AGTGTTATTT TACAAGGCTT GACGGAATGG CAAAAACANA 
    ACTCTCTGCC CAAGGAAAGG NGTNGAGCTC ATTACCTTGN ATACATAATA 
    CAGGANAANT CGNTTGGGTT TATTTNCCGA GTTNTTNTGC CCNAAACAAG 
    GAGGAAAANT CAAT

AT5G57180.2

Model type
Protein coding
Short Description
chloroplast import apparatus 2
Curator Summary
Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description
chloroplast import apparatus 2 (CIA2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 1820 Blast hits to 1799 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 7; Plants - 1718; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57181.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR