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54-3355-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1584582 [Map]; Strand: c
      • AT3G05480.2 - [+] show detail - cell cycle checkpoint control protein family
        Distance: -720; Region: promoter
      • AT3G05480.3 - [+] show detail - cell cycle checkpoint control protein family
        Distance: -720; Region: promoter
      • AT3G05480.1 - [+] show detail - cell cycle checkpoint control protein family
        Distance: -752; Region: promoter
    Flanking Genome Sequence: 54-3355-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CATACGCTGA CTTATTAATC TTTGACTCCT 
    AAACTCCTTT TAATTTATTT GATATATTGA CAAGTAACAC CTAGACTTTG 
    AAAATTTGTA ACTAATCACT CATGTTAGCA TTACGTGATC TACNGGTACC 
    GTGTATATGT TAAATAATAG AGATAACAAA GTATGTAGAC TATTCCAATA 
    TAATACGTTT AAGTCTCTAA GACAAGTCTA TACAACATTG GCCCCATGTA 
    TGTCAAATTT GCTGACACTT GAGAAGTTAA ATGAACCAAG TAGAAAGAGT 
    GAAAACAATA GAGAACAAAT ATTGTGTACA AGTCTAGTGA TATTCGCGAA 
    AAAAAAAAAN GNNTAGGGAN NTTCGTTTNA CTCAATCTNA AGGGNAAAAN 
    AAATCATTCA ATCTAGTAAT CTNCTNCTAN GGGAATTTTC ANATTTTTTT 
    NTCNNCGNGA NAAATNGGAT NGAAACNCNC AATTNTNAAC CTNNGNTTTG 
    NTCCCTTAAA AAANGNNGAA NGTAANTNCA ACTTTTCCAA TNATANGTCT 
    NTCCCTNATT TCAATATTAT GTCCTTGTAA ACACATTNTA TATNATCTTA 
    TTTGGAGGAA CTTTGATATA ACTNTTNTTA AAAACNCNTT CAAAGGCCAA 
    ACCCTAGCTT TNTAAAAAGG CNTTCTTCNT TTCAAACTAA NAAAATCNTN 
    GN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1584593 [Map]; Strand: c
      • AT3G05480.2 - [+] show detail - cell cycle checkpoint control protein family
        Distance: -709; Region: promoter
      • AT3G05480.3 - [+] show detail - cell cycle checkpoint control protein family
        Distance: -709; Region: promoter
      • AT3G05480.1 - [+] show detail - cell cycle checkpoint control protein family
        Distance: -741; Region: promoter
    Flanking Genome Sequence: 54-3355-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGA 
    CCAATGAAAA AGTAAGAAAC CATAATTTAG GGATGATATA TGTATGCTAA 
    AGTATCTAAC TTTTTTCATA TTCAAAAGTC GAATGCAGAA AGTTACAACT 
    TTTGTCTGCA TTTCTCAGAG ATATTGAGAA GAGTTTTATG AGTTGATATG 
    TTCTGTCTAC ATTTAGCATA AAAAAGGGGA ATCCATATTT ACAGAGAGTT 
    GTTTGTACCC ACTTTGTCTT GAGAATAAAG TAAATAATCA GTTTGGAGAA 
    ACAAACAAAA AATTTAAAAC AAATATACTA GCCCATAAAT TGTCAGATAT 
    ATCACATGCT AGTTTGGAGA AAATTGTAGA TTCCATTTGC AAGAAATAAG 
    AAGAAAAGAA AGACAAATAT TTCTTTTCTT TTTATTTTAA ACTGAAAAAT 
    GAAATCAAAT AATTGCCGAT TTTTAGATTT GTGGTTCGGT AAAGGAAAAC 
    AGTACAATTG CGAGATTTGT CCTTGTCACC GCAACAAATA TATTTCGCAA 
    TAATAAATGC CAATTAAAGT ATACCACCGG CACCGAACTA GTCAATGACG 
    TCACTCTATC TGAGACATAA GCCCAATTAA ATCGTGCGGT TAAAAGCCCA 
    TTAACTAATA TCAATATAGG CCCATTATTA AGAAACTATA CTATGACTTT 
    TTAGTATATT TCGCGCTTTA AGCTGATTTC AGGAATTTCA TGGCAATCCC 
    GCCAAT

AT3G05480.1

Model type
Protein coding
Short Description
cell cycle checkpoint control protein family
Curator Summary
Involved in the regulation of DNA damage repair and homologous recombination.
Computational Description
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 299 Blast hits to 299 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 56; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05480.2

Model type
Protein coding
Short Description
cell cycle checkpoint control protein family
Curator Summary
Involved in the regulation of DNA damage repair and homologous recombination.
Computational Description
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05480.3

Model type
Protein coding
Short Description
cell cycle checkpoint control protein family
Curator Summary
Involved in the regulation of DNA damage repair and homologous recombination.
Computational Description
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552).
Link
InterPro Scan - TAIR