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54-3370-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 257024 [Map]; Strand: c
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3370-1 - 5-prime edge
    CTCGCGACGG ATACTGTTCA TTATAATCCG TCGGAGCTTT ATTCTTGGCT 
    TGATAATATG CTCTCTGAGC TTAATCCTCC TCCTCTTCCG GCGAGTTCTA
    ACGGTTTAGA TCCGGTTCTT CCTTCGCCGG AGATTTGTGG TTTTCCGGCT
    TCGGATTATG ACCTTAAAGT CATTCCCGGA AACGCGATTT ATCAGTTTCC
    GGCGATTGAT TCTTCGTCTT CGTCGAATAA TCAGAACAAG CGTTTGAAAT
    CATGCTCGAG TCCTGATTCA ATGGTTACAT CGACCTCGAC GGGTACGCAG
    ATTGGTGGAG TCATAGGAAC GACGGTGACG ACAACCACCA CGACAACGAT
    GGCGGCGGCT GAGTCAACTC GTTCTGTTAT CCTGGTTGAC TCGCAAGAGA
    ACGGTGTTCG TTTAGTCCAC GCGCTTATGG CTTGTGCAGA AGCAATCCAG
    CAGAACAATT TGACTCTAGC GGAAGCTCTT GTGAAGCAAA TCGGATGCTT
    AGCTGTGTCT CAAGCCGGAG CTATGAGAAA AGTGGCTACT TACTTCGCCG
    AAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 257140 [Map]; Strand: c
      • AT2G01570.1 - [+] show detail - GRAS family transcription factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3370-1 - 3-prime edge
    GTCGCGAGAT GAGATAAACC ATCTTCTTGA ACATTACTCA TCATCGTCTC 
    TAATTGTTCG AGTTTCAAAG CAACCTCCGC CATCTCCGAT GACCTAACTT
    TGTAACCTAA AACAGCGAGA AGCTCATCGT CCATGTTACC TCCACCGTCT
    TCTTCTTTTT TCACCATCAT CATCTTATCT TTAGAAATTG ATGATGAAGA
    AGAAGAAGTC CCGTGGTTGG ACAATCGACC TTGGAATTGA TGATGATCTC
    TCTTCATTTT TCAGCTATGA GTTTCGATTA GATTAGGTCT GATCTTGGAT
    CTAGGGTTTT GCCTTTTTTT TAGTTTGTGT GTGTTTGGGG AGGATGAAGG
    AAGAAGAAGA AGGAACATGT GACTTCTCTA TGTGAAGAAT CTTAAGAGCA
    AATGGGTTTG GGATTGGATT GCTTTTGTTT TTCACTGCTA CTACCACTTC
    AATCATCATT CATACCAGAA CTAATAATAA TAATTTCTCA AAATAATAAT
    AAAAAAATTT CTCAAAAAAT ATTTATTTTA TTTACCAGAA AATATAAATT
    TATTAAAATA AAAAGATATT TATTCTGGAT GAAAATTAAA AAAAAGAAAA
    GAAAAAGAAT GGTGGTGATG GGGCTCGACG ACCAATGAAT AATGTACCAG
    AAAGAGTAAC ATACATACAC ATCTAAAGTG ATAAGGCTGT GAAATTACAA
    CACACATTAC TAATTT

AT2G01570.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Computational Description
REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR