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54-3374-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10489394 [Map]; Strand: c
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-3374-1 - 5-prime edge 
    CCCCTCGGTG CTGGTTTAAG AAGTTGTCTG ATGCCCTCTT ACGTTTTGGT 
    TTTGTGCAAG GTCATGAAGA CTACTCTTTC TTTTCTTATA CACGTAATGG 
    TATAGAACTC CGTGTGTTGG TATATGTCGA CGATCTCTTG ATTTGTGGTA 
    ATGATGGTTA TATGCTTCAG AAATTCAAGG AGTATTTAGG ACGGTGTTTC 
    TCCATGAAAG ATTTGGGGAA GTTAAAATAC TTCCTTGGTA TTGAAGTAAG 
    TCGGGGCTCT GAAGGTATTT TTTTATCACA ACGCAAGTAT GCACTGGACA 
    TCATCACCGA CAGTGGCAAC CTTGGATGTC GCCCAGCTTT AACCCCGTTA 
    GAACAAAACC ATCACTTGGC CACTGATGAC GGTCCGCTTC TCGCCGACGC 
    CAAACCCTAT CGAAGACTTG TTGGTCGTTT GCTTTATCTC CTTCATACTA 
    GACCTGAATT AAGTTACTCT GTTCATGTCT TATCTCAGTT CATGCAAACT 
    CCTCGTGAGG CTCATTTAGC TGCGGCCATG CGTATTGTTC GTTTTTTGAA 
    AGGGTCACCT GGTCAAGGAA TTTTGTTAAA CGCGGACACA GAATTACAAC 
    TTGATGTTTA TTGCGATTCG GATTTTCAGA CTTGTCCTAA AACAAGGAGA 
    TCTCTAAGTG CTTATGGTTG TGTTACTTTG GTGGNTCAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10489510 [Map]; Strand: c
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-3374-1 - 3-prime edge 
    CCGAGGGGCT TGTTTCAAAC CATACAATGA CTTGCGAAGA CGACAAACTT 
    TGTCGGGATG AGAATGACGA AAACCAGGAG GTAGCTTCAT GTAGACCTCT 
    TCATCAAGAT CACCATGAAG AAAGGCATTG TTAACATCCA TTTGATAAAC 
    CTCCCATTGG TTAGCAGCAA CAAGGCGAAG AAGAGTACGA ACCGTAGTCA 
    TTTTCACAAC TGGCGCAAAA GTTTCATTGT AGTCTTCCCC TTCAACTTGT 
    TTGTTCCCTT GAACAACAAG ACGAGCTTTG TATCGTTCAA TGGACCCGTC 
    AGCATTATAC TTAGTCTTAT ACACCCATTG ACTGCCAATA GCTACCTTTC 
    CCGGTGGCAA ATCAACGATA TCCCATGTCT TATTAATCTC GAGAGCATCG 
    ACCTCTTTAA ACATTGCATC ATTCCAAACT TTAATCCGAA CAGCCTCTTT 
    GAAGTGTTTA GGTTCGTCAT TAGCAGTGAT CGCAGCAAGA AAAGCT

AT2G24660.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR