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54-3375-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 642140 [Map]; Strand: c
      • AT2G02440.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bac...
        Distance: 2835; Region: intergenic
      • AT2G02450.1 - [+] show detail - NAC domain containing protein 35
        Distance: -5904; Region: intergenic
    Flanking Genome Sequence: 54-3375-1 - 5-prime edge
    CTTCTACGAT CCATTCCTTC AAAATAAAAA TACTTTTGAT AGTTAACGAT 
    ATTTTCATTC ATATAGAGAA TCTCAAGAAT TTGTTTGGAC CGACCAGGCA
    GCATGACCTC GTGGAGATCC GAGAGCTAAG TCCATTAATG AAAAATTATT
    GAACGTTAGA TTGCGATGAT AAATGTTTCT ATAAATTCTA TAGAGTTCAT
    TAGTGGAAAT TTATGAAATT TGTTTTGTTG TATCGCTTTT ATAAACGTAC
    GCGAGTACAT TGATGAAATG GATTTGAAAA AAACGTTATG TTCAACAAAA
    GAATCAAAAT CTTCTCTAAA AATAATTAAT AAATTAAGTC TATTGGTTTG
    GTGATGTCAA AGTGTCGAGA ACTCGAGACT GAAAGTTCAA AAACATAGAG
    AAGAAAACGA AGAGTATATA TGAGCGTGAC CTCATGGAAA TGGATAAATG
    ACGTAGGAAG ATCTAATCGG ACGATAGACA ACAAGACAAG AGGCCCACCA
    GCACCGTCGG ATTTAATGAC GATGGGGTTA ATGAAAAAAA TGCTTGACTC
    TCTGACTAGA CGGACCCAGG ACTCGACTCT GACAGTCCGT TGACTCTCTG
    ACTTTAAAAG TAATTTGATT ACACATATCT ACCAGAAATG TGTTTTCTCC
    TTTTTAATAA CAACAAACCA CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 642256 [Map]; Strand: c
      • AT2G02440.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bac...
        Distance: 2951; Region: intergenic
      • AT2G02450.1 - [+] show detail - NAC domain containing protein 35
        Distance: -5788; Region: intergenic
    Flanking Genome Sequence: 54-3375-1 - 3-prime edge
    CGTAGAAGAG ATGCGACATA CGTCATTTTC ATGCATTAAG TTTTGTCCCC 
    ACATTTAAAA TTAAAATAAA AGTTAAATTT TGTAATTTTG TGTAAATGAA
    GACAAATCAT TCTTCGATCA ACTTGTGGCT GCATTATTGG CNTGGGCGGT
    CCATACAACA CACACACAAG ATAAACATAA AATTGTACGT CGGTCTTATT
    CTTCCATGCA ATTTGGTTGG TTTTATTCTA TAGAATAGCC ATCCCTCAAA
    AAAACCCATA TTTTGGTTTA TTTATTGTTT GACATACCAA TCTTTTCACT
    TTCATACCTT TTAACATATC GTTTCAACGT GAAATAATTA TTTAATTTAA
    TATTTCTATC ATTCATAAAA TCTTCAGGTT TTCGTTTTTC TTTCTAAATT
    TATAATTACC AATCGAGTTT CATTGTTTAC ATTAGTGGTA ATTATACACA
    GTTTAATTAT CTTGTAGAAT TTTAGCACTA TATATTGCAA GTTGCAACTG
    ATTGATACCA GAGATTTATA TCCCGTGTAT ATAAGTCTGG AGATCAGCTT
    GAAATATATT AATATTGGCT TTTGACTCGT GTTGTGGTGA TATAGAGTAA
    AAATGTTATA ATAAGAAGCA CCGAGAGGAA TTGACAAAAA CAAAAAACAC
    AGAGAGGAAA ACTTATCTTT ATTGTAAGAA AAAATTAAGA AACT

AT2G02440.1

Model type
Protein coding
Computational Description
unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02450.1

Model type
Protein coding
Short Description
NAC domain containing protein 35
Computational Description
LONG VEGETATIVE PHASE 1 (LOV1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 4817 Blast hits to 4369 proteins in 130 species: Archae - 0; Bacteria - 5; Metazoa - 115; Fungi - 57; Plants - 2924; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).
Link
InterPro Scan - TAIR