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54-3375-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 642140 [Map]; Strand: c
      • AT2G02440.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bac...
        Distance: 2835; Region: intergenic
      • AT2G02450.1 - [+] show detail - NAC domain containing protein 35
        Distance: -5904; Region: intergenic
    Flanking Genome Sequence: 54-3375-1 - 5-prime edge 
    CTTCTACGAT CCATTCCTTC AAAATAAAAA TACTTTTGAT AGTTAACGAT 
    ATTTTCATTC ATATAGAGAA TCTCAAGAAT TTGTTTGGAC CGACCAGGCA 
    GCATGACCTC GTGGAGATCC GAGAGCTAAG TCCATTAATG AAAAATTATT 
    GAACGTTAGA TTGCGATGAT AAATGTTTCT ATAAATTCTA TAGAGTTCAT 
    TAGTGGAAAT TTATGAAATT TGTTTTGTTG TATCGCTTTT ATAAACGTAC 
    GCGAGTACAT TGATGAAATG GATTTGAAAA AAACGTTATG TTCAACAAAA 
    GAATCAAAAT CTTCTCTAAA AATAATTAAT AAATTAAGTC TATTGGTTTG 
    GTGATGTCAA AGTGTCGAGA ACTCGAGACT GAAAGTTCAA AAACATAGAG 
    AAGAAAACGA AGAGTATATA TGAGCGTGAC CTCATGGAAA TGGATAAATG 
    ACGTAGGAAG ATCTAATCGG ACGATAGACA ACAAGACAAG AGGCCCACCA 
    GCACCGTCGG ATTTAATGAC GATGGGGTTA ATGAAAAAAA TGCTTGACTC 
    TCTGACTAGA CGGACCCAGG ACTCGACTCT GACAGTCCGT TGACTCTCTG 
    ACTTTAAAAG TAATTTGATT ACACATATCT ACCAGAAATG TGTTTTCTCC 
    TTTTTAATAA CAACAAACCA CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 642256 [Map]; Strand: c
      • AT2G02440.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bac...
        Distance: 2951; Region: intergenic
      • AT2G02450.1 - [+] show detail - NAC domain containing protein 35
        Distance: -5788; Region: intergenic
    Flanking Genome Sequence: 54-3375-1 - 3-prime edge 
    CGTAGAAGAG ATGCGACATA CGTCATTTTC ATGCATTAAG TTTTGTCCCC 
    ACATTTAAAA TTAAAATAAA AGTTAAATTT TGTAATTTTG TGTAAATGAA 
    GACAAATCAT TCTTCGATCA ACTTGTGGCT GCATTATTGG CNTGGGCGGT 
    CCATACAACA CACACACAAG ATAAACATAA AATTGTACGT CGGTCTTATT 
    CTTCCATGCA ATTTGGTTGG TTTTATTCTA TAGAATAGCC ATCCCTCAAA 
    AAAACCCATA TTTTGGTTTA TTTATTGTTT GACATACCAA TCTTTTCACT 
    TTCATACCTT TTAACATATC GTTTCAACGT GAAATAATTA TTTAATTTAA 
    TATTTCTATC ATTCATAAAA TCTTCAGGTT TTCGTTTTTC TTTCTAAATT 
    TATAATTACC AATCGAGTTT CATTGTTTAC ATTAGTGGTA ATTATACACA 
    GTTTAATTAT CTTGTAGAAT TTTAGCACTA TATATTGCAA GTTGCAACTG 
    ATTGATACCA GAGATTTATA TCCCGTGTAT ATAAGTCTGG AGATCAGCTT 
    GAAATATATT AATATTGGCT TTTGACTCGT GTTGTGGTGA TATAGAGTAA 
    AAATGTTATA ATAAGAAGCA CCGAGAGGAA TTGACAAAAA CAAAAAACAC 
    AGAGAGGAAA ACTTATCTTT ATTGTAAGAA AAAATTAAGA AACT

AT2G02440.1

Model type
Protein coding
Computational Description
unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02450.1

Model type
Protein coding
Short Description
NAC domain containing protein 35
Computational Description
LONG VEGETATIVE PHASE 1 (LOV1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 4817 Blast hits to 4369 proteins in 130 species: Archae - 0; Bacteria - 5; Metazoa - 115; Fungi - 57; Plants - 2924; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).
Link
InterPro Scan - TAIR