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54-3386-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22983105 [Map]; Strand: c
      • AT5G56840.1 - [+] show detail - myb-like transcription factor family protein
        Distance: 763; Region: intergenic
      • AT5G56850.1 - [+] show detail - unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 grow...
        Distance: 2088; Region: intergenic
    Flanking Genome Sequence: 54-3386-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT AATTACATAT CGTTCGTTTT TAAATAGATT 
    TCTCTTCGTA AATAATAAAT TAAAATATTA GAATTAAAAT TAAAATTAGA 
    TAAAAAATAT TGGAAATATA AAATGATCAT ATTTTCTTAC AAAATAATGT 
    TTTAAACCGA ATTTTGTGTG AAAAGAGGAA GTATATATCA AAATCATAAA 
    TAATATAATA TCTTGTCGTC CAGTCACTTT GGGTCATTTC CAATAGTAGC 
    GTCACTATTA AACAACTTGC ACTAAATATA GAAATGTAAA AAATGTGACC 
    TTTTTGTTTC TTTTTTCTTT TTCGCCAACA ACAAAATTAT AACAATTCTG 
    AGAAAGACCC TTGGTTTTGT GTTAAAGTGG ATTCAGTGTT AAATATTATT 
    GAGCTCTTGT GGACTCAATA TCAGTTCTTA AAGTTATCTT TACATTATGT 
    TTGAAACTCG TGTTTATTGT TTTATTAACA GAAAACTAAC AATGTGAAAG 
    TATTCTGTTA AAAACGAAAT TTTAAAAGTA TTCTAAATTT TTAGATATGT 
    TAAAAGTATT CTAAATTTTT GAAACACATT TCGAAAAGAA TATTTTTTTT 
    AAAAACGAAT CTTGAAATAT TTAATGAACT AGAAAACAAG AAACTTCAAA 
    CAAGTTGTAC TATGTACAAA ATTGTCTTAT CCGTTCTAAT TCTATCGTAA 
    GAAACTTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22983098 [Map]; Strand: c
      • AT5G56840.1 - [+] show detail - myb-like transcription factor family protein
        Distance: 756; Region: intergenic
      • AT5G56850.1 - [+] show detail - unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 grow...
        Distance: 2095; Region: intergenic
    Flanking Genome Sequence: 54-3386-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGTATGTAAT AGAGATTTAT ATATTTTTAA TATGTATGAA AAATGCTAGA 
    ATAACATTTT TGTGAAGAGA ATTTAAAATA GTCAAATAGT TTTTTTTTTT 
    TTTTNGGNNN NAAAAANNCC AAAANNNNAA ANNNCNAANT TTNGGGNNAA 
    AAANTGGGGG NNGGGGTTTT TNCCCCCNNN NAANNAANCN ANGGGGNCNC 
    CCGGGNANAA AAANTTTTTT TTTNNNNNTT NNAANAAACC CTTNNNNTTN 
    GGGGAAANNN TTTTNNNCCN GGNAAAANNN NNNCCCCCNA ANNNNNNNAA 
    AAAAAAANNA ANTTTNAANT TTTNGGGGGG GNTTTTTNCC CNNNAAAANG 
    GGGGGNTNAC CCCCCAAAAA AAAAAAAANC CNNNNTTTNC CCNGGGGGNG 
    NNNNTTNGGN CNANGGGGNA NNNAAAAAAN TTNNNGGGGN TNCCNTTNNN 
    NNNNCCNNNN NNAAAANTTT TNTNCCCCCC CCCAAAAAAA NTTTNCNTTN 
    GNTTTTAAAA AAAAAANNNT TTCCCTNNNN TTNACCCTTN NCCCAAANNN 
    TTNAAAANNN AAAANNNTTN NCANNCCANT TTTTTNAAAA NNANAANCCT 
    TTNTTTTCCC CAATTCNCCC CCCCAAAAAA GGGGNNGGGG AAAAACCCCC 
    TTTTNAANNC CCCAAAAGGG GNCCCCCATT TTTAACCCGG AACCCCNNGA 
    CCNTTGGGGA AAATTTC

AT5G56840.1

Model type
Protein coding
Short Description
myb-like transcription factor family protein
Computational Description
myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT5G47390.1); Has 1025 Blast hits to 1022 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 894; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56850.1

Model type
Protein coding
Computational Description
unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR