1. Home
  2. Mutant Lines
  3. 54-3398-1

54-3398-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26452297 [Map]; Strand: c
      • AT5G66190.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: intron3 (CDS)
      • AT5G66190.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-3398-1 - 5-prime edge
    CTTTGGAGAC TCCAAGACCG TAAGCAAATA ATCCCTCTAA CAACTAACTA 
    AATAATGATT TACAAAATGA TCTTCTCTTA TCTGGAAATG GATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26452413 [Map]; Strand: c
      • AT5G66190.1 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: exon3 (CDS)
      • AT5G66190.2 - [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-3398-1 - 3-prime edge
    CTCCAAAGTC ACCAATGGCA CTACTGGCGA TAGAGTAAAG CCTGAGCTTG 
    TGCGGCTTCC CGTTCTTGTC TATTCCCTCT GGAATCACTC CTATCGATTG
    TCCTTCTCTA TACGGAACCT CACCTAAGTC ATCAACCAAC CTAATCAAAT
    CTCTCACTCG AAAAATGCCT CTAAAAAATA CAATCAAAAG CCCCCTAATT
    AAGGGATTTA CCTTCGGTGG TGAAGACAAT GTGCCAAGTC TCACCGGGAG
    CGTCATCACC GGTGATCTTG GTGTTCAAAA GGCAGCGACC AGTGTAAGGG
    TTCTTAGGTT TGAATTTGTT GACAACAATT CCTTCTTCCT GTTTCTTAGA
    CTCCTTGACT ACTTTAACTG GTGGTGCCTC GGTAGTATCA GTTGTCACCT
    GAGCCTTCAC TGACACAACT CTTCTGTAAC ACACTGTGCT CTGTATGCAG
    GTGCACGAGA TAAATAGCAA TTATGCATGT CAAGATCCAG CTTTACAATT
    AGTGATTAAT TAAAACATGA TAAACGAAAT GGAAATGGAA ATGGAAATGA
    TACCTTCTTG AGGAAAATCC TTTGAGGGGA TACAGAGGAG ATTTTGGTGG
    GGAGAGAGGA TGACTTGGAG GAAGGTAAAG AGACTGCAGC ACTTATAGCA
    GCAGCCATGG TTGATCAGAA GAAGAAGAAG AAGATGAACT GATGGGAGAT
    CAAAGTCAA

AT5G66190.1

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 1
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
Computational Description
ferredoxin-NADP(+)-oxidoreductase 1 (FNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66190.2

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 1
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
Computational Description
LEAF FNR 1 (ATLFNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3); Has 7407 Blast hits to 7407 proteins in 1806 species: Archae - 24; Bacteria - 3962; Metazoa - 817; Fungi - 811; Plants - 610; Viruses - 0; Other Eukaryotes - 1183 (source: NCBI BLink).
Link
InterPro Scan - TAIR