1. Home
  2. Mutant Lines
  3. 54-3401-1

54-3401-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18001219 [Map]; Strand: w
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6485; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 93; Region: intergenic
    Flanking Genome Sequence: 54-3401-1 - 5-prime edge
    CCCATATGAG CACATTTCAA TTAAAAACCA ATGGTAAGAG CATTTTCCAT 
    GCAAGATTCG AGAGATATTA ACCCAGTGAC TGTTAAAACA GCTTAGAACC
    CTAATAACGA ATTTCAATTA CTCAATTTAC CATTCGCATT TCGCAATAAC
    CAAACTGAGC CAGTCACAAG GAGTAAACCG AACCGGATTA TTTATTTATA
    AAATGAAAGA AAGGAAACCA AACAACAACA GCAGTAGTAG TCTGACGTAA
    ACCAAAAAGC AGGCAGATCA ACAACTAAAA GAAACTCAAA TTACCAAAAC
    AAACAGGAAA TTGCAAACTA AGTTTTTTTA CCATATGCAT ACAAAGACCA
    TAAAAGGTTC TGATAATCAC CGGTTTCATC TCTCAGTATT TAATCCGGCC
    ATCTCCTTCC GTTATGACAT CGTTGAAAGT GCCACCACTC GGGATCATCG
    GCAACACATG TTCTTGGTGC GGACAAATCA CATCCAACAG GTAAGGTCCT
    GGTGTATCCA GCATTGTCTG AATAGCTTCT CGGAGATCTG CTTTCTTTGT
    CACCCTCGCC GCTGGAATCC CGCAAGCTGC TGCAAACAGC AACATGTTCG
    GGAATATCTC GTCCTCCTGA GCCGGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18001103 [Map]; Strand: w
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6369; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 209; Region: intergenic
    Flanking Genome Sequence: 54-3401-1 - 3-prime edge
    CATATGGGCC GTGGTTTCCA AATTAAATAA AACTACGATG TCATCGAGAA 
    GTAAAATCAA CTGTGTCCAC ATTATCAGTT TTGTGTATAC GATGAAATAG
    GGTAATTCAA AATCTAGCTT GATATGCCTT TTGGTTCATT TTAACCTTCT
    GTAAACATTT TTTCAGATTT TGAACAAGTA AATCCAAAAA AAAAAAAAAA
    AAATNNCNNC CCCCCCCCNA ANTTTTTTNA NGNNNAAAAA ANGCCTAAAA
    NNTTNGGGTT AAAAAAAAAA ANCNNAAAAC CNNAAAANCN NTTNNAAANN
    GNNNNNNNAA AAANNCCCGN ANGGGGGTTT NNNNAAANTT TTTNNGTTTG
    GGGNNCCCCN NNNCCNAAAN GGNAANCCCA AANCCCNTNT NNANNNTTGG
    GNNGGGGNAN TTTTNAAAAA NNTTTTTTTT TTTNAANNNG GNAAAAAANT
    TTCCCCCCNG GGNCNGNANN CCCGGGGGNN NTTTTTANA

AT3G48550.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR