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54-3410-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2312765 [Map]; Strand: c
      • AT2G05970.1 - [+] show detail - F-box family protein with a domain of unknown function (DUF295)
        Distance: -2981; Region: intergenic
      • AT2G05980.1 - [+] show detail - transposable element gene
        Distance: 1038; Region: intergenic
    Flanking Genome Sequence: 54-3410-1 - 5-prime edge 
    GGGNNAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTCT ACTTATGGTA GCTAGCTTCT GGACCGTATG TAATCTCAAT 
    ATTTTTAATC ATTTAGGTAG CGAGAGAATT GATATATCAT TTATAGAGTT 
    TGATTTACCA AGGTTTTACT TTGATAGAAA TTTGACACTA AGGTTCGATC 
    TAGTATAGAT TATCTCACGA TTTGTCCTTA AGAATGGATC GTCTAAAATT 
    CTAATATTTT TAATCATTTT ACCGGTGAAA GAATTGATTT ACCACTATAC 
    TGTTTGACCT ACTTAGATAT TTGACCTATT TATGTGAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2312780 [Map]; Strand: c
      • AT2G05970.1 - [+] show detail - F-box family protein with a domain of unknown function (DUF295)
        Distance: -2996; Region: intergenic
      • AT2G05980.1 - [+] show detail - transposable element gene
        Distance: 1023; Region: intergenic
    Flanking Genome Sequence: 54-3410-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATTAGACAAC TACTACGTGA AACACATCGA AGCACGTCTT GACAAAGCTC 
    TGAATAATTA GCTTCCTTTT TTATTTTGCT CAATAATCAT TTGTTTTCAC 
    AATTTTGTTG GAAAGAAAGA GAGCCGCAAA ACCATTGTTG TTTTTAAATT 
    TTTTGATGAA ATATACAATA TTTTTAGAGC CAAAGCAAAT TCCAATCTTT 
    TAAAAGAAAT TCTTAAACTT GAATATATAA TTTAACCATT GAATGATTAC 
    ATTTTTTCCA ATGATTTCAT ATATATATAT ATTTTGGAAA GGTAACTAAA 
    CTTAATAGTT AAAGTTATTT TGTAAGTTTG ATTATTAGTT AATGATGATT 
    GATGAATAAG TAATTTTAAT GACACATGTT TAAATTAAAA TTACATATTT 
    ATACCATGAA AAAGGTACTC TTCTGTTAAC AAAGAAAATG TACTCTTATG 
    GTTTTGACAT CAATAGATAA ATTTTCTCTT TGTCCCAAAC TTTACATGGT 
    AAACTATATA GAATTTTTAA ACATAAAAAT ATAGGAGATA TTGATGGAAT 
    AACACATTTA TGATGTTTAA TTGATTTGAT ACGAAAAGCG ACAATATGCA 
    AATATCATTT TCACTAAGAG GAAACATTAT AGAGAAACGA AACAATATTT 
    TCCACTCGTA CATGGCTAAT AGAAAATCCA CCTACTAATT CCATATGCTT 
    GGTACATAGT TGCGTAN

AT2G05970.1

Model type
Protein coding
Short Description
F-box family protein with a domain of unknown function (DUF295)
Computational Description
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G17565.1); Has 491 Blast hits to 474 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 491; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G05980.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.0e-42 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR