1. Home
  2. Mutant Lines
  3. 54-3411-1

54-3411-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21628724 [Map]; Strand: c
      • AT5G53290.1 - [+] show detail - cytokinin response factor 3
        Distance: -9457; Region: intergenic
      • AT5G53300.4 - [+] show detail - ubiquitin-conjugating enzyme 10
        Distance: 3297; Region: intergenic
    Flanking Genome Sequence: 54-3411-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TAGATATTCT AGTACCCAAA CCTTAGATCA 
    TTATAAATTT AGAACTCAAT AATAATAGCA CTATTTTTGG ATTCGACTCC 
    TGGTACAAGT GAATGACCAA TGCTATAGAT TATGATCCCA CGGTCGTGCT 
    GTGTCAGAAA ATCAGACGTG GCAGAATCGA AACCGTTAGT GGAGAGAGAT 
    GCGAAGTTGT CGCACGTGTG ACTATTATGG AGTATGGGGC TGAGTCTGTC 
    AAGTCAACAA ATAATTACTA AGCTGTGACT GTGAGACACA CTATAATTAA 
    TAGTGTTTCA CAATTTATTT GTATCTAATT CTTTATTCAT CTTATGCTTA 
    ATGACCTTTT AGACTTTACA AAGTATTATT CTCGAGATCC TTAGTGGTAA 
    TAGACATCTA ATTATGTTCA GTTTCCACTT AAGTTCTTTT CGATCTAAAA 
    TCACATGGCT TTATCAAATG TTTTCTCCAT TTCAAACTAT TCTTCTTTCA 
    AAAGCTGGAT TTTTTCTTTC TTATGTATAA TTATTTTAGT TCTTTTGTTT 
    GCCCCTATAA GTATCAATAA GAAACCACTT TAATCACACC TAATAAAAAT 
    GTCAAACTAA AATATACTTG TAACTGTTAA TTGTAAACTC AAAAGTTTAA 
    ATAATTTTGT AAGAGAAGAA GTATAAATTA TAAACAAAAC TCTTTTNCAA 
    CTTCGTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21628720 [Map]; Strand: c
      • AT5G53290.1 - [+] show detail - cytokinin response factor 3
        Distance: -9453; Region: intergenic
      • AT5G53300.4 - [+] show detail - ubiquitin-conjugating enzyme 10
        Distance: 3301; Region: intergenic
    Flanking Genome Sequence: 54-3411-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    ATAATCTATC TACATGAATC AGTTATTAAT CAGCAATGTA CTAGCGTCTG 
    ATTCTGAGCA TAAATAACTT TGTTTAGGAC CTACAAAATA CATGCATAAA 
    TAGATTTTTT TTTATCAAGA ACTTGATTTT CATTTTCGTG GAAAAGTTGT 
    TCGATCTTTA TGGAATTGCT AAATCAATTC AATGAATTTG TATCGCTGAA 
    ATTGAAAAGC CCTAATAATA GGAGAATAAT TGTGAAACCA TCTTCTTTTG 
    TTTGCCTTTA AACATGCAAG CCACATAATA AACTAAGGAA TATCATATTA 
    AAAGTAATAA TTTGACTAAT TAATCCGGGA AACCGTTTTA ACAATCTTTT 
    ACGCGAAATT TGGCTAAAAA GTTTTTGACT TTTTATCGCT TATGCATCCT 
    ACATAACGAC GATATCAATT TGATAATCTT TATAGACTTT TATCTACAAA 
    ATCCGATGAT ACAAATAAAA AAATTCAATA TAGGAAATTA TCATTTCAAA 
    ATGAGACTTA TGTAATTTCT TTCATTCAAA TTAACAAGCT

AT5G53290.1

Model type
Protein coding
Short Description
cytokinin response factor 3
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
cytokinin response factor 3 (CRF3); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 4 (TAIR:AT4G27950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53300.4

Model type
Protein coding
Short Description
ubiquitin-conjugating enzyme 10
Curator Summary
Encodes a ubiquitin conjugating enzyme.
Computational Description
ubiquitin-conjugating enzyme 10 (UBC10); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin conjugating enzyme 9 (TAIR:AT4G27960.1).
Link
InterPro Scan - TAIR