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54-3442-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 91970 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-3442-1 - 5-prime edge 
    TCCACTTGGG CCATGCAGCA ACAACCACGA CCGTCTGATC ATCTCTTCGG 
    CGTCCCGTCA TCGTCCAATA TGGGCGGAGG CGGTGAGCTC CAAGCACTGG 
    CGCGTGAGTT TATTCACGGT GGGCAAATGC CAGCTCAGCC ATCGCCGGGA 
    ACCAGTGGTT CTGCCTCGTC AGTGATAAAA CGAGAATGAA GTTATTTTTA 
    TCGTATGTTT GTTTATTTGG ACCGTAAGAG ATCTATAGTT AGCCATATGT 
    TTCTCCTTGT AATATATATA CTTGGTCGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 91854 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-3442-1 - 3-prime edge 
    CAAGTGGAGG ACATGACCGG CTCGAAGATG GAGGAGAGGT CGTACACCGA 
    CGGTGATATT GTTGGGAGGT CCGTTATGGA AAGAGCCTGT AGAGATCCTG 
    AAGATGACAC CGGAACCTGT GGTGGTTGAG GTTGTGGCAG CTCTAGAGTT 
    GCTAAGTGTG CTTGTAGATA TGAAAGCTCA GTTTGCAAAC TTACCACCTG 
    TTTTTTTTAT AACGAAATTG AAATGGATAA TAATGCCAAC AAATATGAAA 
    GAGTGATAAG AATCTAGATA AAATGATATT TTCAGCAATC TTTAATAATT 
    GGAAGAGTTT CCGAATT

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR