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Mutant Lines
54-3473-1

54-3473-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 26500268 [Map]; Strand: c
  - AT5G66320.2 - [+] show detail - GATA transcription factor 5
    Distance: -2591; Region: intergenic
  - AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
    Distance: 134; Region: intergenic
Flanking Genome Sequence: 54-3473-1 - 5-prime edge
```
CGGGATGTGC TATGGTCAGC ACGTGCGACC ATGAATATGA TTTGGGCCCA 
TTTTGTAGGC TGGTGGCCCA GTTGATGATT AGGTCATATG AACAGAACAA 
TCTCATAACC AACAATATCG AGCTATGAGA ATT
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 26500384 [Map]; Strand: c
- AT5G66320.2 - [+] show detail - GATA transcription factor 5
  Distance: -2707; Region: intergenic
- AT5G66330.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
  Distance: 18; Region: intergenic

ACATCCCGTG TATCTTATCC ATTTTTGTTA CACAAACCCA TTTGTCATTA 
GTTAATAACA AGATCGTCTA GTTGGCTAGT TGCTGTCTCT CCAAACGGCA 
ATTTTATTAA ATTAATCACA ATTTAACCGA TGCAATTATC GGGTTAAGCA 
ATTGCCGGAA AAACTCGACC GGACCGGATA CTAACAAGGA AAGAGAAGAT 
TACGGGACGA CGCGGCTAAA CTTTCTACAT TCCTTCGGAG ATCTCTGTTC 
TTGTCCTTGG CAGAAGAATA ACGTCGCCGG ACACCATGAG AAGCAGTTTC 
CGGCGAGCTG CACGTTCGCT GATCCAGGCT TTAACGCCAT CAAAGGACCC 
GGTACGACTC CGAATAAGAA ATTTCCGCCT AGTAAAAGTC TCTGAAACCC 
GGCGAATT

AT5G66320.2

Model type: Protein coding
Short Description: GATA transcription factor 5
Curator Summary: Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational Description: GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66330.1

Model type: Protein coding
Short Description: Leucine-rich repeat (LRR) family protein
Computational Description: Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR