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54-3475-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952355 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1753; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4827; Region: intergenic
    2. Chromosome: 2; Position: 3626535 [Map]; Strand: w
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 75; Region: intergenic
      • AT2G09187.1 - [+] show detail - transposable element gene
        Distance: 13068; Region: intergenic
    Flanking Genome Sequence: 54-3475-1 - 3-prime edge 
    CCCGCTGGTA TCAAAAGTTT TTATTTCATC CGACATGGCG CGACCGACCT 
    CAACGAGAAG GAAATTGTCG TGAACGGTGA GAAGCTCTGG GGCGTGCAAG 
    GTTCCGGAAC GAACATCGGT CTCAATGCAA AAGGGGAACG CCAGGCTCTG 
    TTGGCCCCTC GAGGAGCTTG CATTCGCCAT TCAGGCTGCG CAACTGTTGG 
    GAAGGGCGAT CGGTGCGGGC CTCTTCGCTA TTACGCCAGC TGGCGAAAGG 
    GGGATGTGCT GCAAGGCGAT TAAGTTGGGT AACGCCAGGG TTTTCCCAGT 
    CACGACGTTG TAAAACGACG GCCAGTGCCA AGCTTCCATN NNGNNCCNNA 
    NACCANTNTN ACCCCCTATN GCTTNGNATC TNCTAACAAT GAAACACTTA 
    CTTACGCTNT TAANATCNGG TTGCGGTTAA AGTTGTTNTA CTCAATCATA 
    CNCATGACAA CAANTCATAT TCGACTNCNA TACACTANCC AATCTTCTTC 
    GTGCTTCTCG AAGCT

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G09187.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.3e-226 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR