Home
Mutant Lines
54-3479-1

54-3479-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 24614652 [Map]; Strand: c
  - AT5G61190.1 - [+] show detail - putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
    Distance: -665; Region: promoter
Flanking Genome Sequence: 54-3479-1 - 5-prime edge
```
CCTGAAATAT GACTTGCATT ATACATAGCT TCGTTCGAGC AATCGACCTG 
GCAAAGCT
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 24614765 [Map]; Strand: c
- AT5G61190.1 - [+] show detail - putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
  Distance: -552; Region: promoter

ATATTTTCAG GGCGGAAACA CAAAAACAAA CTTAAAAGTC AAGCTAATCT 
GTTTCTTTAA TTAAATTTAG AGTAATAGAT ATAATGATCT TTGAGGTCTA 
TGGACTTTTG GTAAGGAATA ATTTGAGCCA AATTTGAGCA ATTTTGATTA 
TCGATCGTAC AAGTTGTAGT TTTGTTGCTC CGGAAGATTT CAGATTTTGA 
TGTAAATTTA ATCCCACAAG TTATAAACAT TTTTGTAGTT TATGGAATTG 
AAATTCTAAA CATAATTGTT CTGACAAAAC TTGTATTTTT AATACAATTT 
TGAAACTCTG CACATCCAAT TATTTTCTTT AACGTGCATG CACCGATTTA 
TTTAGTAGCC TTAATTTTTT CTTATTAAGA AAAGATCATT TACTAATTAT 
GACACTTATT TTCGCTAATT ACCGATGGGG AGATACAGCC CCCAAAAGTT 
ACAACGGCTA TTTTCAAATG CTGATTGGTG CCTTTTCAAA TGCTGACGTG 
GCTTAAATAA TAATTGTCGA AAAAGTAGAA TACTGTATTT AACTTGATCG 
TACTACAGAG GACAAAATAA AAAAGCAGAC TTTGCGAAAA GCGAAAGGTT 
TCTTCGTCAA CATGGAAAGA ACTTAGTGGA AACTTCTTAA ACTTAGATTG 
TCAGATTAGC ATAACTCACC TTAGCAAGCT CCGATCTTCG ACGAGATAGT 
GAGAGGAGTN AAGAG

AT5G61190.1

Model type: Protein coding
Short Description: putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
Computational Description: putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 3024 Blast hits to 2428 proteins in 238 species: Archae - 10; Bacteria - 118; Metazoa - 1187; Fungi - 140; Plants - 554; Viruses - 10; Other Eukaryotes - 1005 (source: NCBI BLink).
Link: InterPro Scan - TAIR