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54-3492-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3728419 [Map]; Strand: c
      • AT1G11145.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -253; Region: promoter
      • AT1G11150.1 - [+] show detail - transposable element gene
        Distance: -552; Region: promoter
    Flanking Genome Sequence: 54-3492-1 - 5-prime edge 
    CNGGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC AAGAACTGAT CATCCTATAT GCAAAAAAAT 
    TAGATGGCCC AATTTCAAAA AGACATCAGT GAAAGGAGTT TCCGAAGAGA 
    GCAAGCAATG AAGCAGAGAT AGAACCTGGA TTCAAAAATT TCATAAATAG 
    ATCGGAGAGT GCGAAAACGT AATGGCATAA ATAGATCAGA GATTCCACAA 
    TTTGATGATG ATGAAGAAGC ATAGCTCTTG TGGTATGACA CGTTGGCATG 
    ACATGCCAAA GCTACCCGCG CAAGATGGAG GTGAAGCAGG GACTCACTCT 
    GTTTGCTAGG AACCAGGACA TGAAGGTTCT TGACGCTGAA AGCGGACACG 
    ACTTTTTGTG GATCTACTTT TCATTTTCCT TGCTATCCCT TTGGAGTCTG 
    TATGGGAAAT CACTGGAAGC AATATCGACC TAGTATGCAT TGGCAACTTT 
    TGTAGAAGCT TGAAGGACTT GAGCTCTANG GGAGGCACAG ATGCATCTAC 
    TAACACATGT ATGCTTCCTT GGCAATATAN TTTGCANAAA CCGNTGCTTG 
    GGGTCAGNTA TTNAAACAGN GACNGNNNNN NTNANNNNAN NNNNNNNNGG 
    CCGNNNNCNC NCCNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9542079 [Map]; Strand: c
      • AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon4 (CDS)
      • AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-3492-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTT 
    GACGTTCACA ATTTTTTTAA AACAGATTCT ATTGAAGCTT TTCTAACATA 
    TATATGTTAT AAATATACAC CAGTCTGACA ACTAATAAAA TTTAGAATTC 
    GTACCAGAGT TCCTTCCCAC AGTTTCTCAA GCTTACTATT CTGCATTATG 
    AGTTTAACTA GATACTCCGC CTTAAAAGTA GATGGCAAAG ACTTCAATGG 
    ACAAAATTCC CATTTTAGAA ACCTGAGTTT AAGGGGCAAA TAAACGAGGC 
    TCTGCCACTG AGGTAGATCC CGAGTATGGG AAAACTGACC AATATTTAGA 
    TATTGGAGAT TACGCATGCC TTTGAACGAT TCTTCATCTA TTAACAGCCT 
    TTTCGAAAAA TATTCCGAGT ATGGGAAACA GATTCCAAGA ACAGTTTCTG 
    TCCCCTGTAA AAACAAATCC AAAGAAAACT AATATAATCT TAACAATCGC 
    NNCCCTTTAT ATTTTTNTGA CACATCAAAG CTACCATTTT AATTACGCAC 
    GAGGCAACAA TTGCTAAAGT TTATTAATCC CCANATGACG ATTANNTTGA 
    TNTAAAGNNA AAAACTTACA GNTNTCTCGG TCANTACTTN TTGAATATNC 
    TNAAAATNCG CCGGAAAGCG ACGTNGNNCA GGATTCCNTN ANACTCTTCA 
    CGANCAAGGG NNGNNGCCNC CTTCTGTTTC NNNTTGTGCA TANANAAGGN 
    CCNNCCGNGC GCNATACCCC NC

AT1G11145.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 48 Blast hits to 48 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR

AT4G16950.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR