1. Home
  2. Mutant Lines
  3. 54-3509-1

54-3509-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26112021 [Map]; Strand: c
      • AT5G65330.1 - [+] show detail - AGAMOUS-like 78
        Distance: 670; Region: intergenic
      • AT5G65340.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 1377; Region: intergenic
    Flanking Genome Sequence: 54-3509-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTCT CGACAGAATC GGAGGTCTTC CGGCGATAAG 
    GTTCGTGGGT TTTGCGTATC GTTTGTTGGG TACTCGCTGG GATTGTTGTT 
    GCTGTTGTAG AATTGGGTAA TAGTGGGGAG TGCTTGGAGC AATGTGATAT 
    CGACTTTCTT GATAAAACAC AAGGGCTAGT TTAATTGCAG ATATTCAATC 
    AGCTCAATCT TTATCTTCTT CCTCATACCA TTACTCAGAA ACTACACAGA 
    GATTCTTCTT CTGCAAAAAG TCTAGAGGCT TCACGAACTC ATATCCACTC 
    TCCATCTCCT TGTATATATT AGTTGATTCA GACAAGAAGG ATACTAAGTT 
    GCAAGAATTA AGGTTTTAAT ATTATAATTT GTTTCATGCA AGTTTTTGTG 
    AAAGATTTTT TATGGAAGTT CATATATATA TGTCAATACT AACTGAAAAA 
    AGTATCAACT TAAAAGTAAA AACAAAATCT CCACAAATGG ATTTGTTTTC 
    TTAACAAAAA AAACAAACAA ATGGATTTGT TTTGCAGTTA TAATGACACT 
    ATAAAATATT AAAAAAAACA GTAGCAGAAG AAATCGGAAG CAGAAACAGC 
    TTCGATCTCT CTCTGATCCG CTTGCTACTT AACTATTGAC TGACTCTTAA 
    TGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26112071 [Map]; Strand: c
      • AT5G65330.1 - [+] show detail - AGAMOUS-like 78
        Distance: 720; Region: intergenic
      • AT5G65340.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 1327; Region: intergenic
    Flanking Genome Sequence: 54-3509-1 - 3-prime edge 
    GTCGAGAGAG GAACACCACC TCGTAAAATA ACCGGGAATT TGGTACGATT 
    TTGTTTTTTA TTTGATTTGG TTCGCCACAA GGTTAATTTG GTCTCAAAAC 
    TCAATCCTTT CACCAGGTTT TCATGGCCCG GCCCAATATT AATTTTTAAA 
    GTCCATTTAT TTGCAATAAG GCCTATTAGT AATACCCAAT AAGCCGAAGA 
    TGCAGACGAA GACGATCATT ATTGAGAGAC ATGTATGACG CGTAAAATTT 
    ACTTCAGTTT GTGTTTTTGA GATTGTGGTT GGTTAATGGT TACTGCTCAA 
    GAACAAGAAA CATAACATGG TGTGGTGTCA GATTTATCAT TTTATGCTTC 
    CTTCTTGCTA CTAAGATTAT ATTACTTTTT GTTAAAGATT ATAAGGATTA 
    TTACGTTATC ACCCTGATTG AATAATCCAA GTTTTAGTTG ACAAAACAAA 
    AGGAAGAAGA ATAATTCCAA GTTTTATGCA ATATAGCTTA AATTTTTTGT 
    TCCTCTCAAA ATTCGATTAT CAAGTTACAA AAAAATGTAA TATTTTGCGG 
    ATCATCCAAA ATAATGAGTA GAATTTTTGT GATGTATTGA TCTATTTCTT 
    TGGCCAAAAA CAAAAGAACA TTGGAAAGAG ACAGAGAAAG TTGGCAAGCT 
    GGTTGTCTTA GCTGTTCTTG ATTCCCTCTA AGCAAAAGTA TTAAGCTCAC 
    GAATGAATGA ATAATGGTAT

AT5G65330.1

Model type
Protein coding
Short Description
AGAMOUS-like 78
Computational Description
AGAMOUS-like 78 (AGL78); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell, sperm cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 52 (TAIR:AT4G11250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65340.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF617
Computational Description
Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT2G22460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR