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54-3522-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26066201 [Map]; Strand: w
      • AT5G65220.1 - [+] show detail - Ribosomal L29 family protein
        Distance: 3519; Region: intergenic
      • AT5G65230.1 - [+] show detail - myb domain protein 53
        Distance: -2089; Region: intergenic
    Flanking Genome Sequence: 54-3522-1 - 5-prime edge 
    CTGATGCTGA TGAAATTTTC AACACAAGCA TCTTGGAATT CTCTTAGATT 
    GTGTAAGTAC CAACAGTCTA GTATGTATCA CCTGTGATCC ACAAAGNTNG 
    ATACGNGACC TCCTGGATTT CANTGANTTT AGCNCTGNGG CNNTANTATT 
    GNATCTGACT NATATANNAC NGNGNTCGAT GCNNNCNCNA AANATCCACA 
    GAGAAGNGGG TCNANGTTTN TGTTCNCCCA CAANANGGGG GTATAACCGT 
    TNAGNGCCAA AAGGGNTTTT TTTGGGGGNA NAATATGGNA NGGNNNAAAA 
    CCCNGGGGGN CANGGATTTN TNTGGTTNNA CCCCCCCNCA ACCATTTNNT 
    TAAGGCNGGC GGGNNNGGGG AAAAATCAAN ANACCNTCCA AAAAAAGNTN 
    TNGGGGGGAA AAAACAGGCC CCAAACTTNT TNNAAAAANA ANNNNCGGGC 
    CCCGNCCCCC TNAGGGNAGG GGGGGGGCCC ACTNGAAAAC CAAAGAGNGG 
    NTTGNGCNCC GAACAACNCA NTTTTNCCCG GGAAGGGGNG GNNAAAAAAN 
    CACCGGAAAA AGTCCTTTTT TTCCCANNCT GTGGGGGGGG GAANANCTNN 
    NTTTTNNTAA AAAAANAANT TTTNNGGNGG GGAANACANG GGGGAACCCG 
    CCCTGANCCC TNNTTTTTTN AANANACCAG CANNCACAAA ANAGGNTGGG 
    GGGNNTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26066085 [Map]; Strand: w
      • AT5G65220.1 - [+] show detail - Ribosomal L29 family protein
        Distance: 3403; Region: intergenic
      • AT5G65230.1 - [+] show detail - myb domain protein 53
        Distance: -2205; Region: intergenic
    Flanking Genome Sequence: 54-3522-1 - 3-prime edge 
    AGCATCAGTA AGGATCCTGA AAGATATTGC AACCAGNNNN GNNCNACAAN 
    NTGANACACA TGCACACATA TAATATTAAA CAAGTTCATG AGTAGCTTCA 
    GTCAACAAGT TTTACCGTCT TTTTCAACTG TTCACATGGA AGCAACCTTG 
    TTGGAAAGCA GGAGATTCTG TTTGGAAATT NCGTTCATAC AGTAATCTAA 
    TAANGGTTGA TTATTTCAAC ATCCTAACTA TTGGAGACTG ACTTTCTTTG 
    GNATTAATAG NNGTAAATAC NAACNAGAGC GGANTGTTNN NNATCNNCTA 
    ACAATGCGGG NAACNCANNC GCTACATGCA AGAAAATCTC NTATNTCCCC 
    NGNANTNGAA GAAGANNGGA CTTNTAACAG GGTGGGTGNG ACCCNATTGC 
    AATGGNGNNA NNTTTTCTCA TACTTTGGNG NTATNGGGAA CNAACATNGN 
    GCNNTCCTTN NNAAAGAGGG GGGGGNGGNN TTTNCCTAAA NAANTTTGNN 
    NTGTNANAAA ANNCAAACAC CNATTTTTNG GGGGGCACNN ANTTTGGGGN 
    TNTNGGNGGN GCNAANAANA GGGGGGGGGG GGGGGGGGGN CTAAAACCCN 
    TTTTGGGAAA ANGGGNNTNN CCCCCCTNCC NNAAAAANNG CCTTTNNANG 
    AANNGGGGGG NGGNGGCCCT TTTTTTTTGG GGGGGGCCCC CNCTCAAAAA 
    AAAAAAAAAA AANGGGGGGG GGNCCNCCCC CCCCCNNNNN TNA

AT5G65220.1

Model type
Protein coding
Short Description
Ribosomal L29 family protein
Computational Description
Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast stroma, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65230.1

Model type
Protein coding
Short Description
myb domain protein 53
Curator Summary
Member of the R2R3 factor gene family.
Computational Description
myb domain protein 53 (MYB53); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 92 (TAIR:AT5G10280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR