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54-3555-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18192918 [Map]; Strand: c
      • AT1G49190.2 - [+] show detail - response regulator 19
        Distance: 0; Region: intron3 (CDS)
      • AT1G49190.1 - [+] show detail - response regulator 19
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-3555-1 - 5-prime edge 
    CGACAAGTAC CTTTGGGTTA GCTNCTGCAT TTTGAAATCC AAAAATAATT 
    AACTAAGAAC CAACATTAAT CAAGAGATTA ATGAAAGAGT TAGCCTAGAG 
    ATTAAAGAAA AGTTTGATTA CNTTTCGATA CCACCAATTA TTTCGATGGC 
    TTCCAGAAAT TTTTGGTGAA GCTCTTCGGT CCACGTCATC CGCGGCTTCC 
    GTGGTTTTTN TCCTTGTTTC TTTTCCATGT TTTGTATGCC GTTACCTCCG 
    NTTATGGTTA TGGAATCAAA GTGGTCTCGG TCTAAACCGN CAGTCGGAAC 
    CAGATGTGAT TCGAACCGGT TGAAATACTT CACTCCATGT CATCCGCGGT 
    TTCTTTGCTG CTTTGTTGAA CATGTTATCT TCGTTCATGA TTTGAGAATA 
    GTCACTGAAT TGGCTGAACT CATTGGATTG AACCAGATCT GATTGAACCG 
    GTTGAAGTAC TTCGTTCCAT GTCAATCGCG GATTGGTTGC TGATTTGTTG 
    AACATGCTAT CTTGGTTCAT GATTTGGGAA TATCCATTCA CTTTGCTGAA 
    CTCGTTGGCT TGAACCAGAC CTAATTGAAC CGGTTGAATT TCTTCGGTCC 
    ACGTCAATTG TGGTTTGGTT GCTGCTTTGT TGTACATGCT ATCTTGGNTC 
    ATGATTTGGG AATAGTCATT GAGTTGGGCC GAACTCTTTT GCTTGAACCA 
    GATTTGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18193034 [Map]; Strand: c
      • AT1G49190.2 - [+] show detail - response regulator 19
        Distance: 0; Region: exon4 (CDS)
      • AT1G49190.1 - [+] show detail - response regulator 19
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-3555-1 - 3-prime edge 
    ACTTGTCGAA TGCTTGCAAG AAATGAGGAT AGAAGGAATT ACTAGAAGCA 
    ATGTGGCAAG TCATCTTCAG GTAAAGAAAA AAACACACAC GCTAAATATT 
    GTTTCTTTCA TGACAAGTAT ACCATTGAAT TAGGTTGGTT TTTTCACATA 
    CCAATATAAT ACAAGTTCCA CGTCATTGAA TTTGTGTTGC TGTACAGAAA 
    CACCGTATCA ATCTTGAAGA AAACCAAATT CCTCAACAAA CACAAGGGAA 
    TGGTTGGGCC ACTGCGTATG GTACACTAGC TCCCTCTCTC CAAGGTTCAG 
    ACAATGTCAA CACAACAATA CCATCGTACC TTATGAATGG TCCAGCCACT 
    TTGAACCAAA TCCAGCAGAA TCAATATCAA AATGGTTTCT TGACAATGAA 
    CAACAACCAG ATCATAACCA ATCCTCCGCC TCCTTTGCCC TATTTGGACC 
    ATCATCACCA ACAGCAACAT CAGTCTTCTC CTCAATTTAA TTACCTGATG 
    AACAATGAAG AACTTCTTCA AGCCTCTGGC CTCTCTGCGA CAGATCTTGA 
    ACTCACTTAT CCAAGTTTAC CATATGATCC ACAAGAGTAT CTAATCAATG 
    GCTACAATTA TAATTAGTCA TATAGCCCTT CTCTTTACTT AAGGCAGTCT 
    ATGTATGACA AATAATATGC GACTTCCCTT GTGAGTCACA ATATTGGTTC 
    ATTATTCTTT CATTTAAACT CATTATATAA A

AT1G49190.1

Model type
Protein coding
Short Description
response regulator 19
Curator Summary
member of Response Regulator: B- Type
Computational Description
response regulator 19 (RR19); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 20 (TAIR:AT3G62670.1); Has 45111 Blast hits to 44660 proteins in 2702 species: Archae - 154; Bacteria - 38880; Metazoa - 15; Fungi - 96; Plants - 2828; Viruses - 0; Other Eukaryotes - 3138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49190.2

Model type
Protein coding
Short Description
response regulator 19
Curator Summary
member of Response Regulator: B- Type
Computational Description
response regulator 19 (RR19); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: response regulator 20 (TAIR:AT3G62670.1).
Link
InterPro Scan - TAIR