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54-3582-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26393663 [Map]; Strand: w
      • AT5G65980.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 54-3582-1 - 5-prime edge 
    GTTATATGTT CCATTCAGAT TCTTGGCTTC GTCTTCGGAG CAACCAATTG 
    GCTAAGGAAT CTTATAATCG GGGAGAATGC CCCGTTGCGA GTGATCCAAG 
    ACTCAGTAAA GCTACNTTGG GTATGAACTC ATCTTTTTTT GAATATGGAA 
    ATTACAATTA CATCACGACT TTGCGCCTAA TAGTTGACTT GGCAGGGAGG 
    GCACAATTCC TTGCATCACA CTCATACTGG GGGGAAACCT GATTCAGGGT 
    CTGCGTTCAT CAGCTGTGAA GAAATCAGTG ATTGTGGGAG TGATAATTGT 
    GCGCTATATC CTCCTTCCCG TGGTGGGAGT CGGGGTGGTT CAATTAGCAG 
    GAAATCTAGG CTATCTTCCT CCAGACCCTC TCTTTCGATA CGTTCTCATG 
    CTTCAGTTCG CACTACCGCC TGCCATGAAT ATTAGTAATT ACTCAAGCCA 
    TCCCCCTTCA CTTCATTGTT AGCTAGATAC GGATGATTAA TCATACACTA 
    TATATATATG GATTGCAGGC ACAATGGCAC AACTGTTCGA CGTGGCTCAA 
    GATGAGTGCT CGGTCATCTT CTTGTGGACC TACCTGGTTG CATCTTTAGC 
    CCTCACCGTC TGGTCAACCA TCTTCCTCTN CATCCTCTCC TGAGTCTGAT 
    TTGAAAAGAA AATGGAGTTT GNTTGGTCTC TTGTATGGAT TTTTTTGATT 
    TGGTAATACT CTCATAGAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26393547 [Map]; Strand: w
      • AT5G65980.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 54-3582-1 - 3-prime edge 
    CATATAACAA CGCATCAGAG CAGTGGATTT ATTAGTTGTT GGTTGGAAAC 
    GTAATCATGT CTTCTTTTTT TAAAAAGACT TACGGCACCA ATGGTGGGTG 
    GTGCGAAGAG TTCCTCAAGA ATCTGATGGA GCAAGTCCTT GATGTATGTC 
    CTGGTAGACA CTTTTTGTTT GCCTTGGATT TCAAGGTCTT GGTTTTGGTG 
    CGGCTTGAGG AGAAGAGCGT GGGGATCAGA GTCGATGTCC TTGTTGGGAG 
    ACTTGACCAA CCCGGCGGCT TCAAGAGCTC TAAACTGTGT AGCAGAGCTT 
    CTTACCAGTT GGTAACTGTA CGTCCATATG TAGAAACCCC CGAGCTGCCC 
    TTGACAAAAA TTAATCACAC GATCAACTCA ACAATTAAGT CTGAGCAGAG 
    ATCAGAAGAT CATATGTATG TATGTTTGAC TTACGGCCAT AGAGAAAGAT 
    GCGTAGGAGA GCCCAATGGA TCTGCAGACA CTACGATTCC CAAAAGGACT 
    GCCTTCCTCG TCACAGATGG CAGGGACCAG TATAAGCATA AGGTTCCCCA 
    TATTGCCTAC GTAGACAGGA CAGTAAATAT GATTCATGTG AGAATT

AT5G65980.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Computational Description
Auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G17500.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR