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54-3584-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 234505 [Map]; Strand: c
      • AT2G01510.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -1999; Region: intergenic
      • AT2G01520.1 - [+] show detail - MLP-like protein 328
        Distance: -1420; Region: intergenic
    Flanking Genome Sequence: 54-3584-1 - 5-prime edge 
    CNTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA TCGATAGAAA ATCAATAAAA GTATATATGT 
    TCTGAGAAGA TATCAGACAA TGAATTTAAT ATGTTGATGG GGTTCAACGT 
    CCATGTCTAG GTAGAAAAAT CAATAACATA GTACTAATTT ACTAAATGAC 
    ATATTTACTA AAAACTAAAT GAAATATGTT TACGTTCTAC TGATTTACGC 
    ATGTAAACAT ACATTTATAC TTACTTTATG CCTGTATAAG AAGNCATATG 
    TAGATGATTA CCATTCNCTC CATATTTTAC TATAGACCCN TTTTTTAACA 
    TAATTTACTA TTGACTAANC CACCNTGGTG TGGCCCNNCN CCCCCCTNAT 
    NTTTTNCCCN CCGGGNGGGN GNTTNCCCNC CCCNNAANCG GGTGGGNAAA 
    AAAAANTNNC NNNNNNAANN NNNAANNGGG GGGNGGGNNN NANCCCCNNA 
    AANANAANNN NNNNTGNNAA AAAANNAANN NNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 109582 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -779; Region: promoter
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -971; Region: promoter
    Flanking Genome Sequence: 54-3584-1 - 3-prime edge 
    TTCCAACTAA CCCCTACTCA GTAGCGTATA TCCATTTCCA CCCATACACA 
    ATTATAGTAG TCTACCTTTT TTCTACACAT ATCTGGATTC CAGTTTTTAA 
    GTAGGATTAT TATTGGTTGG TAAAAGATGC AAAGAATATG AGAAAAGGTC 
    TAATTGCGTG CTCCATAAAC CCTTATTCTA GTTCAACCAT AATTGTCAGT 
    CAATAGAAGC AAGATAATTT GAACGTCCAA GTCATCATCA TCTTTTTTTT 
    TCTTTCTGAA ATTTCGTTTT ACAATAAACA AAGAAAGGTT CCGAGTCCTC 
    AAGCATCTCT CACGTCGGAG CAAGTTGCCA TGCACTCTCC AAAATAAAAT 
    AAAAAACAGA CAAAGACTTT AGACTTGNGA CTTTTCGACC TCATTATGTA 
    CTTACTTACT TCATCTTCTA TTTGGCACCC ACAAACAGTA GTTTCCACTT 
    TCTTCCTCAA TAAGTTCCAT TTTTGGATTC TTTCCTATTT TTACACAAAT 
    TTGTTGTATT CTAAAAAGTT ATATATTCTA TTTGCTGGGC TTTAGATATG 
    GGCTGGCTCT GGATATGTGT GTAATGGATA CATATTAGTA AATAGTTAAG 
    TCCAAAAAAG AAATTATAAA CCCCCTATGT AGTTTGAAAA CTGGATCATG 
    TGACAAAACG AGCAGGGAAG GCCCATAATA AGGCCTAATA AGTAAGGNAA 
    GCCCACAGAG AAATATACTT ACGGGCTTGG ATTTCCGAAC CTN

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01510.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 35573 Blast hits to 13630 proteins in 255 species: Archae - 0; Bacteria - 7; Metazoa - 76; Fungi - 94; Plants - 34882; Viruses - 0; Other Eukaryotes - 514 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01520.1

Model type
Protein coding
Short Description
MLP-like protein 328
Computational Description
MLP-like protein 328 (MLP328); FUNCTIONS IN: copper ion binding; INVOLVED IN: response to zinc ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT4G14060.1); Has 369 Blast hits to 340 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 369; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR