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54-3599-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19615156 [Map]; Strand: w
      • AT2G47910.2 - [+] show detail - chlororespiratory reduction 6
        Distance: 0; Region: exon1 (CDS)
      • AT2G47910.1 - [+] show detail - chlororespiratory reduction 6
        Distance: 0; Region: exon2 (CDS)
      • AT2G47920.1 - [+] show detail - Kinase interacting (KIP1-like) family protein
        Distance: -621; Region: promoter
    Flanking Genome Sequence: 54-3599-1 - 3-prime edge
    CTTGTAATTG ATGGTGAATC CGATGGTTCG ATCCAAATAC CGTTTTGGTT 
    CAGCTACACC AAAATCATCA GGCGAGGTTA TGCCGATGGC TCTCTGAAAC
    GGGGATAGGT CAAGCCGCCC AATTGAGTCG TTGTCGATCA CTACTTCGTA
    CCGGCCGGTC GTTGGAGGCA TCGGAGGTTC CACTTTATCT GAATCTGCTA
    CGCCTTTCAC ATAATTAATT AGTAGCAGCC TTTTTTTATT TATCATTCTG
    AATCAATTGA GCAAGTACGA ACCTTGGTCA TTCTCGAAGG CAGAGATGTC
    GAAATTGCCA GAAGGATTGA AGGCGACGGA GACTGCTACG TCTTCTGCCC
    TCCTCTTTCT TACACACCAC CCGGCGGTCT CCAACGCCGG CAATTGAACC
    ACTGGGAACA GCGATACGTG TCTCGGCGAT GGGATAAGCC ACGGGAGAAG
    AACTGCCTTT GTTGCCATTC ACAGACGCTA TCTCTCTTTG TGTCTTAGTC
    TTCTTTTTAT CCTCTTCTTT TGGCCTTTTC TTCATTTCTT TCCATTTTAT
    CCTTTTTTCC TTCACCGCAC AAATACATAT ATTTTGCTGT CTGTCGTAAA
    GGTTTCAAAT GTTAAGCAGA ATGCATTTCT TCAATCGTTC AGAAAAATGA
    AGAGCTCTCT TCTTTAATGT GGAATGTTTT CAACTCAAGT CAGCCTCCTC
    GGTCTCATGT ANATGTAGGC ATTGTCGAAT CTCCTTCACT GGTGGT

AT2G47910.1

Model type
Protein coding
Short Description
chlororespiratory reduction 6
Curator Summary
Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational Description
chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 166 Blast hits to 166 proteins in 69 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47910.2

Model type
Protein coding
Short Description
chlororespiratory reduction 6
Curator Summary
Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational Description
chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47920.1

Model type
Protein coding
Short Description
Kinase interacting (KIP1-like) family protein
Computational Description
Kinase interacting (KIP1-like) family protein; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT1G03470.2); Has 342 Blast hits to 342 proteins in 46 species: Archae - 2; Bacteria - 4; Metazoa - 5; Fungi - 4; Plants - 321; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR