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54-3607-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21510995 [Map]; Strand: c
      • AT5G53048.1 - [+] show detail - other RNA
        Distance: 0; Region: exon4 (NonCoding)
      • AT5G53050.3 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: intron8 (CDS)
      • AT5G53050.2 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: intron8 (CDS)
      • AT5G53050.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 54-3607-1 - 5-prime edge 
    TAGCAAACTA TAAAGACTTT CAGGCTCTGA GGTCTTTTAG GAATAGCATT 
    GCTACTTTGT GGAAGAAGGA ACACATTTTC CTTACTTTTG TTGGTATCTC 
    TGTATTTTCA AAACCTGGAA AATAGATTAA CATACCTTCT TGTCAATTTC 
    AGGTTAATAA AGCTCTTCTC GA

AT5G53048.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G53050
Link
InterPro Scan - TAIR

AT5G53050.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G02340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53050.2

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G02340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53050.3

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G02340.1); Has 11083 Blast hits to 11081 proteins in 1482 species: Archae - 92; Bacteria - 8297; Metazoa - 245; Fungi - 229; Plants - 334; Viruses - 5; Other Eukaryotes - 1881 (source: NCBI BLink).
Link
InterPro Scan - TAIR